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Conserved domains on  [gi|213948237|ref|YP_002323942|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Acyrthosiphon pisum]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009622)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 3-307 6.78e-93

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177241  Cd Length: 306  Bit Score: 277.81  E-value: 6.78e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   3 MFIMIINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPMLG 82
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  83 LLISVVFWFIYPYIGMNYIMGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMFLIN 162
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 163 SFNLNDFYIYQMNSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFMGMLL 242
Cdd:MTH00193 161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 213948237 243 CEMFFGLLMNKFYLNIFILMFMFLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVFNFSIKLF 307
Cdd:MTH00193 241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIF 305
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 3-307 6.78e-93

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 277.81  E-value: 6.78e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   3 MFIMIINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPMLG 82
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  83 LLISVVFWFIYPYIGMNYIMGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMFLIN 162
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 163 SFNLNDFYIYQMNSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFMGMLL 242
Cdd:MTH00193 161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 213948237 243 CEMFFGLLMNKFYLNIFILMFMFLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVFNFSIKLF 307
Cdd:MTH00193 241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIF 305
NADHdh pfam00146
NADH dehydrogenase;
11-300 9.09e-71

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 221.19  E-value: 9.09e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   11 LILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPMLGLLISVVFW 90
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   91 FIYPYIGMNYI--MGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMFLINSFNLND 168
Cdd:pfam00146  83 AVIPFGPGLVLadLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  169 FYIYQMNSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFMGMLLCEMFFG 248
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 213948237  249 ------LLMNKFYLNIFILMFMFLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVF 300
Cdd:pfam00146 243 gwlgpfPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-300 4.58e-67

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 212.68  E-value: 4.58e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   1 MFMFIMIINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPM 80
Cdd:COG1005    6 APLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPI 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  81 LGLLISVVFWFIYPYIGMNYI--MGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLM 158
Cdd:COG1005   86 LAFIPALLAFAVIPFGPGLVLadLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVV 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 159 FLINSFNLNDFYIYQMNSK-FFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMF 237
Cdd:COG1005  166 LLAGSLNLSEIVEAQAGGLwFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFL 245

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 213948237 238 MGMLLCEMFFG-------LLMNKFYLNIF-----ILMFMFLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVF 300
Cdd:COG1005  246 VSALATTLFLGgwlgpfpILPLGGLPGILwfllkTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 3-307 6.78e-93

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 277.81  E-value: 6.78e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   3 MFIMIINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPMLG 82
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  83 LLISVVFWFIYPYIGMNYIMGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMFLIN 162
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 163 SFNLNDFYIYQMNSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFMGMLL 242
Cdd:MTH00193 161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 213948237 243 CEMFFGLLMNKFYLNIFILMFMFLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVFNFSIKLF 307
Cdd:MTH00193 241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIF 305
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 3-304 4.86e-82

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 250.60  E-value: 4.86e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   3 MFIMIINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPMLG 82
Cdd:MTH00218   1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  83 LLISVVFWFIYPYIGMNYIMGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMFLIN 162
Cdd:MTH00218  81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 163 SFNLNDFYIYQMNSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFMGMLL 242
Cdd:MTH00218 161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 213948237 243 CEMFFGLLMNKFYLNIFILMFMFLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVFNFSI 304
Cdd:MTH00218 241 VILFLGTSLTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSL 302
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 7-306 1.15e-81

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 249.18  E-value: 1.15e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   7 IINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPMLGLLIS 86
Cdd:MTH00225   4 LLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILS 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  87 VVFWFIYPYIGMNYIMGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMFLINSFNL 166
Cdd:MTH00225  84 LILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 167 NDFYIYQMNSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFMGMLLCEMF 246
Cdd:MTH00225 164 FDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILF 243

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 213948237 247 FGLLMNK--FYLNIFILMFMFLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVFNFSIKL 306
Cdd:MTH00225 244 FGGFFVTidLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLIILM 305
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 4-304 7.99e-81

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 247.09  E-value: 7.99e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   4 FIMIINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPMLGL 83
Cdd:MTH00143   1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  84 LISVVFWFIYPYIGMNYIMGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMFLINS 163
Cdd:MTH00143  81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 164 FNLNDFYIYQMNSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFMGMLLC 243
Cdd:MTH00143 161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 213948237 244 EMFFGLLMNKFYLN-----IFILMFMFLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVFNFSI 304
Cdd:MTH00143 241 VLFFGGSSVLFLLGgvvfmFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVL 306
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-304 2.98e-75

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 233.63  E-value: 2.98e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   1 MFMFIMIINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPM 80
Cdd:MTH00111   2 PTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  81 LGLLISVVFWFIYPYIGMNYIMGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMFL 160
Cdd:MTH00111  82 LALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 161 INSFNLNDFYIYQMNSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFMGM 240
Cdd:MTH00111 162 SGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNT 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 213948237 241 LLCEMFFGLLMNKFYLNIFILMFM-------FLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVFNFSI 304
Cdd:MTH00111 242 LTTILFLNPSTLNLPPELFTINLMtktllltSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSM 312
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 3-304 2.26e-73

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 228.09  E-value: 2.26e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   3 MFIMIINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPMLG 82
Cdd:MTH00195   1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  83 LLISVVFWFIYPYIGMNYIMGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMFLIN 162
Cdd:MTH00195  81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 163 SFNLNDFYIYQMNSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFMGMLL 242
Cdd:MTH00195 161 SFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLT 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 213948237 243 CEMFFGlLMNKFYLNIFILMFMFLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVFNFSI 304
Cdd:MTH00195 241 TILFLG-GGGTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAI 301
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 3-304 9.92e-73

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 227.18  E-value: 9.92e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   3 MFIMIINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPMLG 82
Cdd:MTH00134   5 LITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  83 LLISVVFW----FIYPYIGMNyimgFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLM 158
Cdd:MTH00134  85 LTLALTLWapmpMPYPVTDLN----LGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 159 FLINSFNLNDFYIYQMNSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFM 238
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 213948237 239 GMLLCEMFFGLLMNKFY-----LNIFI----LMFMFLviWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVFNFSI 304
Cdd:MTH00134 241 NTLSAILFLGASHIPTLpelttINLMTkaalLSVVFL--WVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLAL 313
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-307 2.35e-71

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 223.34  E-value: 2.35e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   1 MFMFIMIINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPM 80
Cdd:MTH00071   2 MTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  81 LGLLISVVFWFIYPYIGMNYIMGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMFL 160
Cdd:MTH00071  82 MALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 161 INSFNLNDFYIYQMNSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFMGM 240
Cdd:MTH00071 162 TGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNT 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 213948237 241 LLCEMFFGLLMNKFYLNIFILMFMF-------LVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVFNFSIKLF 307
Cdd:MTH00071 242 LSTILFLGSTYNHLQPELSTMNLMIkasilsmLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPIS 315
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 1-304 3.31e-71

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 223.31  E-value: 3.31e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   1 MFMFIMIINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPM 80
Cdd:MTH00040   1 MSVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  81 LGLLISVVFWFIYPYIGMNYIMGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMFL 160
Cdd:MTH00040  81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 161 INSFNLNDFYIYQMNSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFMGM 240
Cdd:MTH00040 161 SGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNL 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 213948237 241 LLCEMFFG---LLMNKFYLNIFILMF-----MFLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVFNFSI 304
Cdd:MTH00040 241 LSVILFLGggsPFNEIFPINIIIVGIkttflVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLL 312
NADHdh pfam00146
NADH dehydrogenase;
11-300 9.09e-71

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 221.19  E-value: 9.09e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   11 LILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPMLGLLISVVFW 90
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   91 FIYPYIGMNYI--MGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMFLINSFNLND 168
Cdd:pfam00146  83 AVIPFGPGLVLadLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  169 FYIYQMNSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFMGMLLCEMFFG 248
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 213948237  249 ------LLMNKFYLNIFILMFMFLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVF 300
Cdd:pfam00146 243 gwlgpfPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-307 4.20e-70

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 220.27  E-value: 4.20e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   1 MFMfimiINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPM 80
Cdd:MTH00104   1 MFM----INILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPI 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  81 LGLLISVVFW----FIYPYIGMNyimgFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMN 156
Cdd:MTH00104  77 LALTLALTMWiplpMPYPLINMN----LGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLS 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 157 LMFLINSFNLNDFYIYQMNSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIM 236
Cdd:MTH00104 153 VLLMNGSFTLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANII 232

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 213948237 237 FMGMLLCEMFFGLLMNKFYLNIFILMFM-------FLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVFNFSIKLF 307
Cdd:MTH00104 233 MMNALTTILFLGAFHNPYMPELYTTNFTiktllltILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIM 310
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 3-304 3.75e-69

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 218.06  E-value: 3.75e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   3 MFIMIINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPMLG 82
Cdd:MTH00054   1 MGIIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  83 LLISVVFWFIYPYiGMNYI---MGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMF 159
Cdd:MTH00054  81 LTLAFIAWGVIPY-GEGVVlsdLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVL 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 160 LINSFNLNDFYIYQMNSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFMG 239
Cdd:MTH00054 160 CVGSLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMS 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 213948237 240 MLLCEMFFG----------LLMNKFYLNIFILMFMFLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVFNFSI 304
Cdd:MTH00054 240 TFGVILFLGgwlvisgptsYFSNFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGI 314
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-300 4.58e-67

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 212.68  E-value: 4.58e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   1 MFMFIMIINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPM 80
Cdd:COG1005    6 APLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPI 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  81 LGLLISVVFWFIYPYIGMNYI--MGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLM 158
Cdd:COG1005   86 LAFIPALLAFAVIPFGPGLVLadLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVV 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 159 FLINSFNLNDFYIYQMNSK-FFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMF 237
Cdd:COG1005  166 LLAGSLNLSEIVEAQAGGLwFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFL 245

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 213948237 238 MGMLLCEMFFG-------LLMNKFYLNIF-----ILMFMFLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVF 300
Cdd:COG1005  246 VSALATTLFLGgwlgpfpILPLGGLPGILwfllkTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 7-309 3.62e-64

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 204.63  E-value: 3.62e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   7 IINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPMLGLLIS 86
Cdd:MTH00010   6 FISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  87 VVFWFIYPYIGMNYIMGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMFLINSFNL 166
Cdd:MTH00010  86 LLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSF 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 167 NDFYIYQMnSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFMGMLLCEMF 246
Cdd:MTH00010 166 SKIIMSQY-SWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFF 244

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 213948237 247 FGLLMNKFYLNIFILM----FMFLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVFNFSIKLFNL 309
Cdd:MTH00010 245 TSFIPSIFISDLMLILktvfLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLLL 311
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 2-304 7.57e-64

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 204.58  E-value: 7.57e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   2 FMFIMIINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPML 81
Cdd:MTH00216   4 FIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  82 GLLISVVFWFIYPYIGMNYIMGF--GLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMF 159
Cdd:MTH00216  84 SFTLALIVWGVIPYERGVLISDFkiGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 160 LINSFNLNDFYIYQMNSKFFFF-LFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFM 238
Cdd:MTH00216 164 CVGSLSITEIVLAQNNGIWFFFpLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILM 243

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 213948237 239 GMLLCEMFFG--------LLMNKFYLNIFILMFMFLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVFNFSI 304
Cdd:MTH00216 244 SCLTTILFLGgwlspikyFKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASV 317
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
2-300 5.39e-61

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 196.95  E-value: 5.39e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   2 FMFIMIINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPML 81
Cdd:PRK06076   8 LLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVI 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  82 GLLISVVFWFIYPYIGMNYI--MGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMF 159
Cdd:PRK06076  88 AFIPAFLAWAVIPFGPELVIadLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVL 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 160 LINSFNLNDFYIYQMNSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFMG 239
Cdd:PRK06076 168 LAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVS 247

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 213948237 240 MLLCEMFFG--------------LLMnkFYLNIFILMFMFlvIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVF 300
Cdd:PRK06076 248 ALITTLFLGgwlppfplgggipgAIW--FVLKVAFFVFLF--IWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 8-304 2.27e-54

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 180.60  E-value: 2.27e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   8 INFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPMLGLLISV 87
Cdd:MTH00029  11 IKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAI 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  88 VFWFIYPYIGMNYI--MGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMFLINSFN 165
Cdd:MTH00029  91 LAWAIVTMDQGVFLsdLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLN 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 166 LNDFYIYQMNSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFMGMLLCEM 245
Cdd:MTH00029 171 ISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIF 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 246 FFGLLMNKFY---------------------------LNIFILMFmflvIWLRGFLPRFRYDKLMYLIWKLILPLSLFLF 298
Cdd:MTH00029 251 FLGGWLSPLDgiptppeafsifeqiasskssfwfftkSSIFILFF----IWSRASFPRIRYDQLMKLLWKTYLPLSLGLV 326


                 ....*.
gi 213948237 299 VFNFSI 304
Cdd:MTH00029 327 ILTAGI 332
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 9-306 4.79e-42

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 146.58  E-value: 4.79e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   9 NFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPMLGLLISVV 88
Cdd:MTH00090   1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  89 FWFIYPYIGMNYIMGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMFLINSFNLNd 168
Cdd:MTH00090  81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFV- 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 169 fyiyqmnSKFFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFMGMLLCEMFFG 248
Cdd:MTH00090 160 -------SSFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 213948237 249 LLMnkfylnIFILMFMFLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVFNFSIKL 306
Cdd:MTH00090 233 FSF------LMLFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 4-300 5.06e-38

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 136.21  E-value: 5.06e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   4 FIMIINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPMLGL 83
Cdd:MTH00058   1 IFGLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  84 LISVVFWFIYPYIGMNYIMGFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMFLINS 163
Cdd:MTH00058  81 LLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 164 FNLNDFYIYQMNSkfFFFLFLMFILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIMFMGMLLC 243
Cdd:MTH00058 161 YSLVDFYYSGWLS--VLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGS 238

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 213948237 244 EMFFGllmnKFYLNIFILMFMFLVIWLRGFLPRFRYDKLMYLIWKLILPLSLFLFVF 300
Cdd:MTH00058 239 VLFFG----GGFVSIMLLFHLLFFMWARATLPRVRYDYFVNFFWEYCLVLLILSLFV 291
ndhA CHL00032
NADH dehydrogenase subunit 1
 6-309 1.99e-23

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 98.48  E-value: 1.99e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   6 MIINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPNKFLLSGIFQPMGDGLKLFFKEVNYPSNMNFFIFMFSPMLgLLI 85
Cdd:CHL00032  29 ILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSI-AVI 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  86 SVVFWFIYPYIGMNYIM---GFGLIYMFCCSSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLMFLIN 162
Cdd:CHL00032 108 SILLSYLVIPFGYHLVLadlSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSN 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 163 SFNLNDfyIYQMNSKFFFFLFLM------FILLLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSIM 236
Cdd:CHL00032 188 SLSTVD--IVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 237 FMGMLLCEMFFG--------------LLMNKFY------LNIFI-----LMFMFLVIWLRGFLPRFRYDKLMYLIWKLIL 291
Cdd:CHL00032 266 VSSLFVTVLYLGgwnlsipyifipelFEINKTGgvfgttIGIFItlaktYLFLFISITTRWTLPRLRMDQLLNLGWKFLL 345

                        330
                 ....*....|....*...
gi 213948237 292 PLSLFLFVFNFSIKLFNL 309
Cdd:CHL00032 346 PISLGNLLLTTSFQLLSL 363
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
4-300 3.78e-19

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 85.62  E-value: 3.78e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237   4 FIMIINFLILFLMVFMSVAFFTLLERKVLGYIQLRKGPnkfllsGIFQPMGDGLKLFFKEVNYPSNMNFfIFMFSPMLGL 83
Cdd:COG0650    1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASW-LFRAAPYVAL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237  84 LISVVFWFIYPYIGMNYIMGF-----GLIYMFccsSLMVYIFLMISWSSNSNYSVLGMIRFISQMISYEVSMMIIIMNLM 158
Cdd:COG0650   74 AAMLLAALLVPVLTTGPPLSFsgdliVLVYLL---ALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALA 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213948237 159 FLINSFNLNDFYIYQMNSKFFFFLFLMFIL---LLISFLAEMNRSPFDFSEGESELVSGFNIEFSSLSFIFIFMSEYMSI 235
Cdd:COG0650  151 LLAGSTSLSDIVAYQAAHGPLLLSPSLLLAaiaFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKL 230

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 213948237 236 MFMGMLLCEMFFGLLMNKFYLNIFILMF------MFLVIWLRGFLPRFRYDKLMYLIWKLILpLSLFLFVF 300
Cdd:COG0650  231 FVLLSLFVNLFLPWGIALTLLLALLLFLlkllvlAVLLAVIEASTARLRLFRVPDFLWTAFL-LALLALLL 300
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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