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Conserved domains on  [gi|240266529|ref|YP_002970875|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Gambelia wislizenii]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
2-322 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 617.68  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   2 INNLLNHIINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTP 81
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  82 TLALFIALSIWTPMPMPTALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIVT 161
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 162 LSGGFSLKTITTTQEHTWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMN 241
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 242 TLSCILFISPGNIQ--SELFSTNLMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLALCLWHISMPISMFSLP 319
Cdd:MTH00111 241 TLTTILFLNPSTLNlpPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320

                 ...
gi 240266529 320 PQS 322
Cdd:MTH00111 321 PQL 323
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
2-322 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 617.68  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   2 INNLLNHIINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTP 81
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  82 TLALFIALSIWTPMPMPTALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIVT 161
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 162 LSGGFSLKTITTTQEHTWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMN 241
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 242 TLSCILFISPGNIQ--SELFSTNLMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLALCLWHISMPISMFSLP 319
Cdd:MTH00111 241 TLTTILFLNPSTLNlpPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320

                 ...
gi 240266529 320 PQS 322
Cdd:MTH00111 321 PQL 323
NADHdh pfam00146
NADH dehydrogenase;
13-307 2.18e-123

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 355.63  E-value: 2.18e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   13 LMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTPTLALFIALSIW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   93 TPMPMPT--ALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIVTLSGGFSLKT 170
Cdd:pfam00146  83 AVIPFGPglVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  171 ITTTQEHTWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLSCILFI- 249
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLg 242
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 240266529  250 ---SPGNIQSELFstnLMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLALCLW 307
Cdd:pfam00146 243 gwlGPFPLPGLLW---FLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
2-303 1.35e-110

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 324.39  E-value: 1.35e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   2 INNLLNHIINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTP 81
Cdd:COG1005    5 LAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAP 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  82 TLALFIALSIWTPMPM--PTALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAI 159
Cdd:COG1005   85 ILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGV 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 160 VTLSGGFSLKTITTTQEHT-WMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIL 238
Cdd:COG1005  165 VLLAGSLNLSEIVEAQAGGlWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMF 244
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 240266529 239 MMNTLSCILFI----SPGNIQSELFSTN---LMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLA 303
Cdd:COG1005  245 LVSALATTLFLggwlGPFPILPLGGLPGilwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
2-322 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 617.68  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   2 INNLLNHIINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTP 81
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  82 TLALFIALSIWTPMPMPTALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIVT 161
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 162 LSGGFSLKTITTTQEHTWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMN 241
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 242 TLSCILFISPGNIQ--SELFSTNLMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLALCLWHISMPISMFSLP 319
Cdd:MTH00111 241 TLTTILFLNPSTLNlpPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320

                 ...
gi 240266529 320 PQS 322
Cdd:MTH00111 321 PQL 323
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
1-321 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 559.22  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   1 MINNLLNHIINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILT 80
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  81 PTLALFIALSIWTPMPMPTALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIV 160
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 161 TLSGGFSLKTITTTQEHTWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMM 240
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 241 NTLSCILFISPGNIQS--ELFSTNLMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLALCLWHISMPISMFSL 318
Cdd:MTH00134 241 NTLSAILFLGASHIPTlpELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGL 320

                 ...
gi 240266529 319 PPQ 321
Cdd:MTH00134 321 PPQ 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
2-321 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 551.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   2 INNLLNHIINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTP 81
Cdd:MTH00071   1 MMTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  82 TLALFIALSIWTPMPMPTALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIVT 161
Cdd:MTH00071  81 TMALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 162 LSGGFSLKTITTTQEHTWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMN 241
Cdd:MTH00071 161 LTGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMN 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 242 TLSCILFISPGN--IQSELFSTNLMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLALCLWHISMPISMFSLP 319
Cdd:MTH00071 241 TLSTILFLGSTYnhLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIP 320

                 ..
gi 240266529 320 PQ 321
Cdd:MTH00071 321 PM 322
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
8-321 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 534.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   8 HIINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTPTLALFI 87
Cdd:MTH00104   2 FMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  88 ALSIWTPMPMPTALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIVTLSGGFS 167
Cdd:MTH00104  82 ALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFT 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 168 LKTITTTQEHTWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLSCIL 247
Cdd:MTH00104 162 LSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTIL 241
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 240266529 248 FISPGN--IQSELFSTNLMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLALCLWHISMPISMFSLPPQ 321
Cdd:MTH00104 242 FLGAFHnpYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQ 317
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
5-320 5.55e-161

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 451.29  E-value: 5.55e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   5 LLNHIINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTPTLA 84
Cdd:MTH00218   1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  85 LFIALSIWTPMPMPTALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIVTLSG 164
Cdd:MTH00218  81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 165 GFSLKTITTTQEHTWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLS 244
Cdd:MTH00218 161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 240266529 245 CILFISPGNIqselfSTNLMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLALCLWHISMPISMFSLPP 320
Cdd:MTH00218 241 VILFLGTSLT-----TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
3-320 3.29e-156

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 439.80  E-value: 3.29e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   3 NNLLNHIINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTPT 82
Cdd:MTH00040   1 MSVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  83 LALFIALSIWTPMPMPTALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIVTL 162
Cdd:MTH00040  81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 163 SGGFSLKTITTTQEHTWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNT 242
Cdd:MTH00040 161 SGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 243 LSCILFISPGNIQSELFSTNLM---LKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLALCLWHISMPISMFSLP 319
Cdd:MTH00040 241 LSVILFLGGGSPFNEIFPINIIivgIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILP 320

                 .
gi 240266529 320 P 320
Cdd:MTH00040 321 P 321
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
9-315 1.34e-124

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 359.06  E-value: 1.34e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   9 IINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTPTLALFIA 88
Cdd:MTH00195   5 VIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALA 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  89 LSIWTPMPMPTALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIVTLSGGFSL 168
Cdd:MTH00195  85 LILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDF 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 169 KTITTTQEHTWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLSCILF 248
Cdd:MTH00195 165 TIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILF 244
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 240266529 249 ISPGNIqselfsTNLMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLALCLWHISMPISM 315
Cdd:MTH00195 245 LGGGGT------IIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFAL 305
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
6-304 4.19e-124

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 357.64  E-value: 4.19e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   6 LNHIINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTPTLAL 85
Cdd:MTH00143   1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  86 FIALSIWTPMPMPTALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIVTLSGG 165
Cdd:MTH00143  81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 166 FSLKTITTTQEHTWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLSC 245
Cdd:MTH00143 161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 240266529 246 ILFISPGNIQSELFSTNLMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLAL 304
Cdd:MTH00143 241 VLFFGGSSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
NADHdh pfam00146
NADH dehydrogenase;
13-307 2.18e-123

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 355.63  E-value: 2.18e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   13 LMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTPTLALFIALSIW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   93 TPMPMPT--ALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIVTLSGGFSLKT 170
Cdd:pfam00146  83 AVIPFGPglVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  171 ITTTQEHTWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLSCILFI- 249
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLg 242
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 240266529  250 ---SPGNIQSELFstnLMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLALCLW 307
Cdd:pfam00146 243 gwlGPFPLPGLLW---FLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
9-315 3.88e-120

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 347.53  E-value: 3.88e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   9 IINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTPTLALFIA 88
Cdd:MTH00193   5 LINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLS 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  89 LSIWTPMPMPTALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIVTLSGGFSL 168
Cdd:MTH00193  85 LLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNL 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 169 KTITTTQEHTWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLSCILF 248
Cdd:MTH00193 165 LDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMF 244
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 240266529 249 ISpgniqSELFSTNLMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLALCLWHISMPISM 315
Cdd:MTH00193 245 LG-----GDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
9-310 8.45e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 328.92  E-value: 8.45e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   9 IINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTPTLALFIA 88
Cdd:MTH00225   4 LLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILS 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  89 LSIWTPMPMPTALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIVTLSGGFSL 168
Cdd:MTH00225  84 LILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNL 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 169 KTITTTQEHTWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLSCILF 248
Cdd:MTH00225 164 FDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILF 243
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 240266529 249 ISPGNIQSELFstnLMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLALCLWHIS 310
Cdd:MTH00225 244 FGGFFVTIDLF---LILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLI 302
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
2-303 1.35e-110

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 324.39  E-value: 1.35e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   2 INNLLNHIINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTP 81
Cdd:COG1005    5 LAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAP 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  82 TLALFIALSIWTPMPM--PTALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAI 159
Cdd:COG1005   85 ILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGV 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 160 VTLSGGFSLKTITTTQEHT-WMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIL 238
Cdd:COG1005  165 VLLAGSLNLSEIVEAQAGGlWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMF 244
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 240266529 239 MMNTLSCILFI----SPGNIQSELFSTN---LMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLA 303
Cdd:COG1005  245 LVSALATTLFLggwlGPFPILPLGGLPGilwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
9-320 3.77e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 322.83  E-value: 3.77e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   9 IINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTPTLALFIA 88
Cdd:MTH00054   5 IIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLA 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  89 LSIWTPMPMPTA--LADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIVTLSGGF 166
Cdd:MTH00054  85 FIAWGVIPYGEGvvLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSL 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 167 SLKTITTTQEHTWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLSCI 246
Cdd:MTH00054 165 NLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVI 244
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 240266529 247 LFIS---PGNIQSELFSTNLML--KTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLALCLWHISMPISMFSLPP 320
Cdd:MTH00054 245 LFLGgwlVISGPTSYFSNFVWFgiKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
1-320 8.31e-109

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 319.76  E-value: 8.31e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   1 MINNLLNHIINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILT 80
Cdd:MTH00216   1 MMVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  81 PTLALFIALSIWTPMPMP--TALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLA 158
Cdd:MTH00216  81 PVLSFTLALIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIIS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 159 IVTLSGGFSLKTITTTQEH-TWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANI 237
Cdd:MTH00216 161 VLLCVGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHI 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 238 LMMNTLSCILFISPGNIQSELFSTN---LMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLALCLWHISMPIS 314
Cdd:MTH00216 241 ILMSCLTTILFLGGWLSPIKYFKGGagwFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFG 320

                 ....*.
gi 240266529 315 MFSLPP 320
Cdd:MTH00216 321 FNGPPP 326
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-307 2.25e-106

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 313.28  E-value: 2.25e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   1 MINNLLNHIINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILT 80
Cdd:PRK06076   5 GPDLLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLA 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  81 PTLALFIALSIWTPMPM-PT-ALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLA 158
Cdd:PRK06076  85 PVIAFIPAFLAWAVIPFgPElVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLA 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 159 IVTLSGGFSLKTITTTQEHTWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIL 238
Cdd:PRK06076 165 VVLLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMI 244
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 240266529 239 MMNTLSCILFI----SPGNIQSELF-STNLMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLALCLW 307
Cdd:PRK06076 245 LVSALITTLFLggwlPPFPLGGGIPgAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
9-318 1.21e-91

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 275.51  E-value: 1.21e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   9 IINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTPTLALFIA 88
Cdd:MTH00010   6 FISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILA 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  89 LSIWTPMPMPTALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIVTLSGGFSL 168
Cdd:MTH00010  86 LLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSF 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 169 KTITTTQeHTWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLSCILF 248
Cdd:MTH00010 166 SKIIMSQ-YSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFF 244
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 240266529 249 ISpgNIQSELFS-TNLMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLALCLwhISMPISMFSL 318
Cdd:MTH00010 245 TS--FIPSIFISdLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM--ISIPIMFLLL 311
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
2-320 6.71e-91

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 274.59  E-value: 6.71e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   2 INNLLNHIINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTP 81
Cdd:MTH00029   3 IYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAP 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  82 TLALFIALSIWTPMPMPTA--LADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAI 159
Cdd:MTH00029  83 IISFTLAILAWAIVTMDQGvfLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISV 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 160 VTLSGGFSLKTITTTQEHTWMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILM 239
Cdd:MTH00029 163 ILCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIIL 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 240 MNTLSCILFI------------------SPGNIQSELFSTNLMLKTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLT 301
Cdd:MTH00029 243 MSCMMTIFFLggwlspldgiptppeafsIFEQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLS 322
                        330
                 ....*....|....*....
gi 240266529 302 LALCLWHISMPISMFSLPP 320
Cdd:MTH00029 323 LGLVILTAGILIGFNGVPP 341
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
13-302 8.85e-66

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 208.21  E-value: 8.85e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  13 LMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTPTLALFIALSIW 92
Cdd:MTH00090   3 LLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEW 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  93 TPMPMPTALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIVTLSGGFSLKTIt 172
Cdd:MTH00090  83 FVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVSS- 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 173 ttqehtwMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLSCILFispg 252
Cdd:MTH00090 162 -------FSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLF---- 230
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 240266529 253 niqselFSTNLMLKTTLLTMgFLWTRATYPRFRYDQLMHLLWKQFLPLTL 302
Cdd:MTH00090 231 ------FKFSFLMLFLIFSL-LIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ndhA CHL00032
NADH dehydrogenase subunit 1
13-302 3.37e-53

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 178.22  E-value: 3.37e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  13 LMYIIPILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTPTLA---LFIAL 89
Cdd:CHL00032  34 LTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAvisILLSY 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  90 SIwTPMPMPTALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIVTLSGGFSLK 169
Cdd:CHL00032 114 LV-IPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLSTV 192
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 170 TITTTQEhTWMILsSWPL------AMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTL 243
Cdd:CHL00032 193 DIVEAQS-KYGFW-GWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLF 270
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 240266529 244 SCILFISPGNIQ------SELFSTNLMLKTTLLTMGFLWT--------------RATYPRFRYDQLMHLLWKQFLPLTL 302
Cdd:CHL00032 271 VTVLYLGGWNLSipyifiPELFEINKTGGVFGTTIGIFITlaktylflfisittRWTLPRLRMDQLLNLGWKFLLPISL 349
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
19-302 3.00e-52

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 173.57  E-value: 3.00e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  19 ILVAVAFLTLLERKILGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPTTSSPTLFILTPTLALFIALSIWTPMPMP 98
Cdd:MTH00058  14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSY 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  99 TALADLNLGLLFILALSSISVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAIVTLSGGFSLKTITTTQEHT 178
Cdd:MTH00058  94 YSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLS 173
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 179 WMILssWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILMMNTLSCILFISpGNIQSEL 258
Cdd:MTH00058 174 VLLF--PLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFG-GGFVSIM 250
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 240266529 259 FSTNLMLkttlltmgFLWTRATYPRFRYDQLMHLLWKQFLPLTL 302
Cdd:MTH00058 251 LLFHLLF--------FMWARATLPRVRYDYFVNFFWEYCLVLLI 286
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
6-307 5.29e-34

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 126.45  E-value: 5.29e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529   6 LNHIINPLMYIIPILVAVAFLTLLERKILGYMQLRKGPnivgpyGLLQPIADGVKLFIKEPIRPTTSSPtLFILTP---- 81
Cdd:COG0650    1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASW-LFRAAPyval 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529  82 --TLALFIALSIWTPMPMPTALADLnLGLLFILALSSISvysILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLAI 159
Cdd:COG0650   74 aaMLLAALLVPVLTTGPPLSFSGDL-IVLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFAL 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240266529 160 VTLSGGFSLKTITTTQEHT---WMILSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYAN 236
Cdd:COG0650  150 ALLAGSTSLSDIVAYQAAHgplLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALK 229
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 240266529 237 ILMMNTLSCILFISPGNIQSELFSTNLML-KTTLLTMGFLWTRATYPRFRYDQLMHLLWKQFLPLTLALCLW 307
Cdd:COG0650  230 LFVLLSLFVNLFLPWGIALTLLLALLLFLlKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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