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Conserved domains on  [gi|284794667|ref|YP_003412025|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Lubomirskia baikalensis]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009543)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-118 4.72e-63

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 187.61  E-value: 4.72e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   1 MSAEFLSIFILLLFSIILSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFPW 80
Cdd:MTH00055   1 MSMEFLGIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPW 80

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 284794667  81 CVVYNQIGLFGFWTMYFFLVILTVGLIYEWIKGGLEWE 118
Cdd:MTH00055  81 CVVYNQIGLFGFWVMYLFLIILTIGLIYEWVKGGLEWE 118
 
Name Accession Description Interval E-value
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-118 4.72e-63

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 187.61  E-value: 4.72e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   1 MSAEFLSIFILLLFSIILSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFPW 80
Cdd:MTH00055   1 MSMEFLGIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPW 80

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 284794667  81 CVVYNQIGLFGFWTMYFFLVILTVGLIYEWIKGGLEWE 118
Cdd:MTH00055  81 CVVYNQIGLFGFWVMYLFLIILTIGLIYEWVKGGLEWE 118
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 1-117 4.20e-40

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 129.47  E-value: 4.20e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   1 MSAEFLSIFILLLFSIILSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFPW 80
Cdd:COG0838    1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 284794667  81 CVVYNQIGLFGFWTMYFFLVILTVGLIYEWIKGGLEW 117
Cdd:COG0838   81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
24-116 8.11e-39

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 125.23  E-value: 8.11e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   24 GASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFPWCVVYNQIGLFGFWTMYFFLVILT 103
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAILL 81

                          90
                  ....*....|...
gi 284794667  104 VGLIYEWIKGGLE 116
Cdd:pfam00507  82 VGLVYAWKKGALE 94
 
Name Accession Description Interval E-value
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-118 4.72e-63

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 187.61  E-value: 4.72e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   1 MSAEFLSIFILLLFSIILSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFPW 80
Cdd:MTH00055   1 MSMEFLGIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPW 80

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 284794667  81 CVVYNQIGLFGFWTMYFFLVILTVGLIYEWIKGGLEWE 118
Cdd:MTH00055  81 CVVYNQIGLFGFWVMYLFLIILTIGLIYEWVKGGLEWE 118
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 6-118 2.36e-49

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 152.52  E-value: 2.36e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   6 LSIFILLLFSIILSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFPWCVVYN 85
Cdd:MTH00018   1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYN 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 284794667  86 QIGLFGFWTMYFFLVILTVGLIYEWIKGGLEWE 118
Cdd:MTH00018  81 QIAPFGFWTMVGFLFILTLGLIYEWIKGGLEWE 113
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-118 8.43e-42

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 133.84  E-value: 8.43e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   1 MSAEFLSIFILLLFSIILSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFPW 80
Cdd:PRK06602   4 VLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPW 83

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 284794667  81 CVVYNQIGLFGFWTMYFFLVILTVGLIYEWIKGGLEWE 118
Cdd:PRK06602  84 AVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 1-117 4.20e-40

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 129.47  E-value: 4.20e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   1 MSAEFLSIFILLLFSIILSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFPW 80
Cdd:COG0838    1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 284794667  81 CVVYNQIGLFGFWTMYFFLVILTVGLIYEWIKGGLEW 117
Cdd:COG0838   81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
24-116 8.11e-39

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 125.23  E-value: 8.11e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   24 GASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFPWCVVYNQIGLFGFWTMYFFLVILT 103
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAILL 81

                          90
                  ....*....|...
gi 284794667  104 VGLIYEWIKGGLE 116
Cdd:pfam00507  82 VGLVYAWKKGALE 94
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 1-118 3.83e-35

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 116.96  E-value: 3.83e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   1 MSAEFLSIFILLLFSIILSTVISGASYI-----VGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEIS 75
Cdd:MTH00030   1 MNPEFKTIFFSTLLGVGIILLLVSISFTlgnsrIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEIS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 284794667  76 FLFPWCVVYNQIGLFGFWTMYFFLVILTVGLIYEWIKGGLEWE 118
Cdd:MTH00030  81 FLFPWSIVFNQLNLFSFWIVYTFLIVLAIGLAYEWIKGGLEWD 123
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 8-117 2.39e-34

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 114.71  E-value: 2.39e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   8 IFILLLFSIILSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLF--PWCVVYN 85
Cdd:MTH00069   2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLptPWASQLN 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 284794667  86 QIGLFGFWTMyFFLVILTVGLIYEWIKGGLEW 117
Cdd:MTH00069  82 TPTNTLFWST-LILILLTLGLIYEWIQGGLEW 112
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 8-117 5.75e-33

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 111.16  E-value: 5.75e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   8 IFILLLFSIILSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLF--PWCVVYN 85
Cdd:MTH00136   4 ITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLplPWGDQLP 83

                         90       100       110
                 ....*....|....*....|....*....|..
gi 284794667  86 QIGLFGFWTMyFFLVILTVGLIYEWIKGGLEW 117
Cdd:MTH00136  84 SPLLTFFWAT-AVLILLTLGLIYEWLQGGLEW 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 7-117 1.63e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 107.66  E-value: 1.63e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   7 SIFILLLFSIILSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFP--WCVVY 84
Cdd:MTH00113   2 NLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPlpWAINL 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 284794667  85 NQIGLFGFWTMYFFLvILTVGLIYEWIKGGLEW 117
Cdd:MTH00113  82 TTPTTTLTWATIILT-LLTLGLIYEWLQGGLEW 113
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 7-117 6.23e-31

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 106.22  E-value: 6.23e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   7 SIFILLLFSIILSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFPWCVVYNQ 86
Cdd:MTH00042   3 NLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLI 82

                         90       100       110
                 ....*....|....*....|....*....|..
gi 284794667  87 IGL-FGFWTMYFFLVILTVGLIYEWIKGGLEW 117
Cdd:MTH00042  83 TNPsTLLPISLIFLIILTIGLVYEWVNGGLEW 114
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 5-117 4.39e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 93.81  E-value: 4.39e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   5 FLSIFILLLFSIILSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFPWcVVY 84
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPL-PWS 79

                         90       100       110
                 ....*....|....*....|....*....|...
gi 284794667  85 NQIGLFGFWTMYFFLVILTVGLIYEWIKGGLEW 117
Cdd:MTH00203  80 NQLSSLSLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 6-118 5.78e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 93.38  E-value: 5.78e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   6 LSIFILLLFSIILSTVISGASYIVGVK-QPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFPWCVVY 84
Cdd:MTH00148   2 LSILLSLLFALILSPVLLLLGLVLSKRsYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 284794667  85 NQIGLFGFWTMYF-FLVILTVGLIYEWIKGGLEWE 118
Cdd:MTH00148  82 GSSFSVWSLTSLFiFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 36-117 1.83e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 92.31  E-value: 1.83e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667  36 SEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLF--PWCVVYNQIGLfgFWTMYFFLV-ILTVGLIYEWIK 112
Cdd:MTH00106  31 SEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLplPWASQTNNLNT--MLTMALLLIsLLALSLAYEWTQ 108


                 ....*
gi 284794667 113 GGLEW 117
Cdd:MTH00106 109 KGLEW 113
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
5-117 1.46e-24

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 90.19  E-value: 1.46e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   5 FLSIFILLLFSIILSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFPWCVVY 84
Cdd:PRK07756   9 YMIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAY 88

                         90       100       110
                 ....*....|....*....|....*....|...
gi 284794667  85 NQIGLFGFWTMYFFLVILTVGLIYEWIKGGLEW 117
Cdd:PRK07756  89 DKLGLFALIEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 8-118 1.12e-23

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 87.80  E-value: 1.12e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   8 IFILLLFSIILSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIP--FSVRFFLVGILFMIFDLEISFLFPWCVVYN 85
Cdd:PRK07928   7 ILVLGALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFD 86

                         90       100       110
                 ....*....|....*....|....*....|...
gi 284794667  86 QIGLFGFWTMYFFLVILTVGLIYEWIKGGLEWE 118
Cdd:PRK07928  87 ALGVFGLVEMALFMLTVFVAYAYVWRRGGLEWD 119
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 8-117 7.57e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 85.60  E-value: 7.57e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   8 IFILLLFSIILSTVISGASYIVGVKQP-DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFPWCVVYNQ 86
Cdd:MTH00161   2 ILIILLIILLISIILMILASLLSKKSImDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKT 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 284794667  87 IGLFGF-WTMYFFLVILTVGLIYEWIKGGLEW 117
Cdd:MTH00161  82 SNMMSWlITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 10-117 6.45e-20

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 78.36  E-value: 6.45e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667  10 ILLLFSIILSTVISGASYIVGVKQP-DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFPWCVVYNQIG 88
Cdd:MTH00012   6 IPMMISLILPPLVLGAAWVLAARSTaDREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTST 85

                         90       100       110
                 ....*....|....*....|....*....|
gi 284794667  89 LFGFWTMY-FFLVILTVGLIYEWIKGGLEW 117
Cdd:MTH00012  86 SKTVVYTSiLFLLILVIGLIHEWREGSLDW 115
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
5-118 2.25e-19

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 77.01  E-value: 2.25e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   5 FLSIFILLLFSIILSTVISGASYIVGVK--QPDSE--KVSVYECGFDPF-ESSRIpfSVRFFLVGILFMIFDLEISFLFP 79
Cdd:PRK08489  10 YFGVFVLLVLTFVAFFLTTRLARFISRKlaQKNTEklKLAIYECGPEPVkQPNRI--SSHFYIMALLFILFDVEIVFMFP 87

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 284794667  80 WCVVYNQIGLFGFWTMYFFLVILTVGLIYEWIKGGLEWE 118
Cdd:PRK08489  88 WAVDFKLLGLFGLIEMLLFIVLLTIGFIYAWKKGALEWQ 126
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 11-117 4.59e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 75.80  E-value: 4.59e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667  11 LLLFSIILSTVISGASYIVGV-----KQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFPWCVVYN 85
Cdd:MTH00202   3 LILFMSILSILISSLLFLVSWmlsfrSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLK 82

                         90       100       110
                 ....*....|....*....|....*....|...
gi 284794667  86 QIGLFGFWTMYF-FLVILTVGLIYEWIKGGLEW 117
Cdd:MTH00202  83 SSWSKGGLLGGTiFLLILIGGLIHEWKEGSLDW 115
ndhC CHL00022
NADH dehydrogenase subunit 3
 4-117 5.73e-19

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 75.79  E-value: 5.73e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   4 EFLSIFILLLFSIILSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFPWCVV 83
Cdd:CHL00022   6 EYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMS 85

                         90       100       110
                 ....*....|....*....|....*....|....
gi 284794667  84 YNQIGLFGFWTMYFFLVILTVGLIYEWIKGGLEW 117
Cdd:CHL00022  86 FDVLGVSAFIEALIFVLILIVGLVYAWRKGALEW 119
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 5-117 5.32e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 42.19  E-value: 5.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   5 FLSIFILLLFSIILSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEISFLFPwcVVY 84
Cdd:MTH00060   4 LLFVFFVFFLLFLVIYFFHSGLWNNKIYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLN--MPF 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 284794667  85 NQIGLFGFWTMYFFLVILTVGLIYEWIKGGLEW 117
Cdd:MTH00060  82 QGLLFYNFWYYYFFLLLLFLGFVVELFSGYVRW 114
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 46-117 1.29e-05

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 41.72  E-value: 1.29e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 284794667  46 FDPFESSRI-------PFSVRFFLVGILFMIFDLEISFLFPWCVVYNQIGLFGFWTMYFFLVILTVGLIYEWIKGGLEW 117
Cdd:PRK06432  64 LEPYESGEVareiwggPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLFAVYYAFKMGYMRW 142
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 5-117 1.74e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 40.65  E-value: 1.74e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284794667   5 FLSIFILLLFSIILSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFMIFDLEIsFLFPWCVVY 84
Cdd:MTH00092   1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEI-VMFLGLLVS 79

                         90       100       110
                 ....*....|....*....|....*....|...
gi 284794667  85 NQIGLFGFWTMYFFLViltVGLIYEWIKGGLEW 117
Cdd:MTH00092  80 DFSSLISFFMLMIFIF---FGFYMEWWYGKLIW 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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