|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10352 |
PRK10352 |
nickel transporter permease NikB; Provisional |
18-314 |
1.45e-178 |
|
nickel transporter permease NikB; Provisional
Pssm-ID: 182400 [Multi-domain] Cd Length: 314 Bit Score: 495.76 E-value: 1.45e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 18 AASAIIFLLLRLGAGDPALDYLRLSNLPPTEEMVASTRELLGLNQPLAMQYLHWLWRALHLDFGLSYATQRPVLDDLLHF 97
Cdd:PRK10352 18 AASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFATQRPVLDDLLNF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 98 LPATLLLTGAALALILVTSLPLGIWAARHRDRLPDYIVRLIAFLGVSMPNFWLAFLLVMLFSVHLQWLPAMGYGDWQHLI 177
Cdd:PRK10352 98 LPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGWQHII 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 178 LPAVSIAFMSLAINARLLRASMLDAASQRHVIWARLRGLSARQVERRHILRNATLPVVTAMGMHIGELIGGTMIIENIFA 257
Cdd:PRK10352 178 LPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAVGMHIGELIGGTMIIENIFA 257
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 378981165 258 WPGVGRYAVSAIFNRDYPVIQCFTLMMVTVFVLANLAVDVLNAALDPRLRRHEEVSA 314
Cdd:PRK10352 258 WPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEGAHA 314
|
|
| nickel_nikB |
TIGR02789 |
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ... |
18-314 |
7.18e-150 |
|
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131836 [Multi-domain] Cd Length: 314 Bit Score: 423.02 E-value: 7.18e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 18 AASAIIFLLLRLGAGDPALDYLRLSNLPPTEEMVASTRELLGLNQPLAMQYLHWLWRALHLDFGLSYATQRPVLDDLLHF 97
Cdd:TIGR02789 18 AASLLAFILIHLGPSDPAEDYLRLSHIPPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDFGISYISDRPVLDEIARS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 98 LPATLLLTGAALALILVTSLPLGIWAARHRDRLPDYIVRLIAFLGVSMPNFWLAFLLVMLFSVHLQWLPAMGYGDWQHLI 177
Cdd:TIGR02789 98 LPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSVYLNLLPTNGAGTWQHLV 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 178 LPAVSIAFMSLAINARLLRASMLDAASQRHVIWARLRGLSARQVERRHILRNATLPVVTAMGMHIGELIGGTMIIENIFA 257
Cdd:TIGR02789 178 LPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITALGMHIGELLGGTFVIENIFS 257
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 378981165 258 WPGVGRYAVSAIFNRDYPVIQCFTLMMVTVFVLANLAVDVLNAALDPRLRRHEEVSA 314
Cdd:TIGR02789 258 WPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRIRRKEGVHA 314
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
18-308 |
5.35e-111 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 324.33 E-value: 5.35e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 18 AASAIIFLLLRLGAGDPALDYLrlsNLPPTEEMVASTRELLGLNQPLAMQYLHWLWRALHLDFGLSYATQRPVLDDLLHF 97
Cdd:COG0601 18 GVSTLVFLLLRLLPGDPAAALL---GPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSFVYGRPVSDLIAER 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 98 LPATLLLTGAALALILVTSLPLGIWAARHRDRLPDYIVRLIAFLGVSMPNFWLAFLLVMLFSVHLQWLPAMGYGD----- 172
Cdd:COG0601 95 LPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLGWLPVSGRVSpwedf 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 173 ---WQHLILPAVSIAFMSLAINARLLRASMLDAASQRHVIWARLRGLSARQVERRHILRNATLPVVTAMGMHIGELIGGT 249
Cdd:COG0601 175 ldaLRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLGGLLGGA 254
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 378981165 250 MIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVTVFVLANLAVDVLNAALDPRLRR 308
Cdd:COG0601 255 VVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRL 313
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
116-308 |
1.59e-33 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 121.64 E-value: 1.59e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 116 SLPLGIWAARHRDRLPDYIVRLIAFLGVSMPNFWLAFLLVMLFsvhlqwlpamGYGDWQHLILPAVSIAFMSLAINARLL 195
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA----------ILSILGHGILPAIILALLGWAGYARLI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 196 RASMLDAASQRHVIWARLRGLSARQVERRHILRNATLPVVTAMGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYP 275
Cdd:pfam00528 71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYP 150
|
170 180 190
....*....|....*....|....*....|...
gi 378981165 276 VIQCFTLMMVTVFVLANLAVDVLNAALDPRLRR 308
Cdd:pfam00528 151 EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
114-290 |
1.78e-17 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 78.86 E-value: 1.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 114 VTSLPLGIWAARHRDRLpDYIVRLIAFLGVSMPNFWLAFLLVMLFSVHLQWlpamgyGDWQHLILPAVSIAFMSLAINAR 193
Cdd:cd06261 17 VLGLLLGIILARKRGKL-DRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------GILPGLGLPALILALLLIAPFAR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 194 LLRASMLDAASQRHVIWARLRGLSARQVERRHILRNATLPVVTAMGMHIGELIGGTMIIENIFA----WPGVGRYAVSAI 269
Cdd:cd06261 90 LIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGgeapGPGTGLLLIFAI 169
|
170 180
....*....|....*....|.
gi 378981165 270 FNRDYPVIQCFTLMMVTVFVL 290
Cdd:cd06261 170 LFPGDLGVAAAVALILLLLSL 190
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10352 |
PRK10352 |
nickel transporter permease NikB; Provisional |
18-314 |
1.45e-178 |
|
nickel transporter permease NikB; Provisional
Pssm-ID: 182400 [Multi-domain] Cd Length: 314 Bit Score: 495.76 E-value: 1.45e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 18 AASAIIFLLLRLGAGDPALDYLRLSNLPPTEEMVASTRELLGLNQPLAMQYLHWLWRALHLDFGLSYATQRPVLDDLLHF 97
Cdd:PRK10352 18 AASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFATQRPVLDDLLNF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 98 LPATLLLTGAALALILVTSLPLGIWAARHRDRLPDYIVRLIAFLGVSMPNFWLAFLLVMLFSVHLQWLPAMGYGDWQHLI 177
Cdd:PRK10352 98 LPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGWQHII 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 178 LPAVSIAFMSLAINARLLRASMLDAASQRHVIWARLRGLSARQVERRHILRNATLPVVTAMGMHIGELIGGTMIIENIFA 257
Cdd:PRK10352 178 LPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAVGMHIGELIGGTMIIENIFA 257
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 378981165 258 WPGVGRYAVSAIFNRDYPVIQCFTLMMVTVFVLANLAVDVLNAALDPRLRRHEEVSA 314
Cdd:PRK10352 258 WPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEGAHA 314
|
|
| nickel_nikB |
TIGR02789 |
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ... |
18-314 |
7.18e-150 |
|
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131836 [Multi-domain] Cd Length: 314 Bit Score: 423.02 E-value: 7.18e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 18 AASAIIFLLLRLGAGDPALDYLRLSNLPPTEEMVASTRELLGLNQPLAMQYLHWLWRALHLDFGLSYATQRPVLDDLLHF 97
Cdd:TIGR02789 18 AASLLAFILIHLGPSDPAEDYLRLSHIPPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDFGISYISDRPVLDEIARS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 98 LPATLLLTGAALALILVTSLPLGIWAARHRDRLPDYIVRLIAFLGVSMPNFWLAFLLVMLFSVHLQWLPAMGYGDWQHLI 177
Cdd:TIGR02789 98 LPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSVYLNLLPTNGAGTWQHLV 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 178 LPAVSIAFMSLAINARLLRASMLDAASQRHVIWARLRGLSARQVERRHILRNATLPVVTAMGMHIGELIGGTMIIENIFA 257
Cdd:TIGR02789 178 LPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITALGMHIGELLGGTFVIENIFS 257
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 378981165 258 WPGVGRYAVSAIFNRDYPVIQCFTLMMVTVFVLANLAVDVLNAALDPRLRRHEEVSA 314
Cdd:TIGR02789 258 WPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRIRRKEGVHA 314
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
18-308 |
5.35e-111 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 324.33 E-value: 5.35e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 18 AASAIIFLLLRLGAGDPALDYLrlsNLPPTEEMVASTRELLGLNQPLAMQYLHWLWRALHLDFGLSYATQRPVLDDLLHF 97
Cdd:COG0601 18 GVSTLVFLLLRLLPGDPAAALL---GPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSFVYGRPVSDLIAER 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 98 LPATLLLTGAALALILVTSLPLGIWAARHRDRLPDYIVRLIAFLGVSMPNFWLAFLLVMLFSVHLQWLPAMGYGD----- 172
Cdd:COG0601 95 LPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLGWLPVSGRVSpwedf 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 173 ---WQHLILPAVSIAFMSLAINARLLRASMLDAASQRHVIWARLRGLSARQVERRHILRNATLPVVTAMGMHIGELIGGT 249
Cdd:COG0601 175 ldaLRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLGGLLGGA 254
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 378981165 250 MIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVTVFVLANLAVDVLNAALDPRLRR 308
Cdd:COG0601 255 VVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRL 313
|
|
| PRK15081 |
PRK15081 |
glutathione ABC transporter permease GsiC; Provisional |
20-307 |
7.17e-63 |
|
glutathione ABC transporter permease GsiC; Provisional
Pssm-ID: 185039 [Multi-domain] Cd Length: 306 Bit Score: 201.48 E-value: 7.17e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 20 SAIIFLLLRLGAGDPAldylRLSNLPPTEEM-VASTRELLGLNQPLAMQYLHWLWRALHLDFGLSYATQRPVLDDL-LHF 97
Cdd:PRK15081 20 AVLVFLFVHLLPGDPA----RLAAGPEADAQvVALVRQQLGLDQPLPHQFWHYISNALQGDFGTSMVSRRPVSEEIaSRF 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 98 LPATLLLTGAALALIlVTSLPLGIWAARHRDRLPDYIVRLIAFLGVSMPNFWLAFLLVMLFSVHLQWLPAMGYGDWQHLI 177
Cdd:PRK15081 96 MPTLWLTITSMVWAV-IFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELGWLPTVGADSWQHYI 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 178 LPAVSIAFMSLAINARLLRASMLDAASQRHVIWARLRGLSARQVERRHILRNATLPVVTAMGMHIGELIGGTMIIENIFA 257
Cdd:PRK15081 175 LPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFN 254
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 378981165 258 WPGVGRYAVSAIFNRDYPVIQCFTLMMVTVFVLANLAVDVLNAALDPRLR 307
Cdd:PRK15081 255 WPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
|
|
| SapB |
COG4168 |
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms]; |
61-310 |
3.07e-55 |
|
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
Pssm-ID: 443329 [Multi-domain] Cd Length: 321 Bit Score: 181.96 E-value: 3.07e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 61 NQPLAMQYLHWLWRALHLDFGLSYATQRPVLDDLLHFLPATLLLTGAALALILVTSLPLGIWAARHRDRLPDYIVRLIAF 140
Cdd:COG4168 37 DASLFSGYLFYLQNLLQGDFGISSINGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 141 LGVSMPNFWLAFLLVMLFSVHLQWLPAMGYGD----------------W---------------QHLILPAVSIAFMSLA 189
Cdd:COG4168 117 LGFSIPVFWLALLLILFFSLNLGWLPVSGRYNllyeippvtgfalidaWlsdspyrlkaiqsalQHLILPTLVLAVAPTT 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 190 INARLLRASMLDAASQRHVIWARLRGLSARQVERRHILRNATLPVVTAMGMHIGELIGGTMIIENIFAWPGVGRYAVSAI 269
Cdd:COG4168 197 EVIRLTRQSTEEVMNQNYIKAAATRGLSRFTIIRRHVLRNALPPIIPQLGLQFSTMLTLAMITEVVFSWPGIGRWLINAI 276
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 378981165 270 FNRDYPVIQCFTLMMVTVFVLANLAVDVLNAALDPrLRRHE 310
Cdd:COG4168 277 RQQDYAAISAGVIVIGTFVIIVNILSDILGALLNP-LKRKE 316
|
|
| oppB |
PRK09471 |
oligopeptide ABC transporter permease OppB; |
22-307 |
1.42e-50 |
|
oligopeptide ABC transporter permease OppB;
Pssm-ID: 181886 [Multi-domain] Cd Length: 306 Bit Score: 169.48 E-value: 1.42e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 22 IIFLLLRLGAGDPaldYLRLSNLPPteEMVASTRELLGLNQPLAMQYLHWLWRALHLDFGLSYATQRPVLDDLL-HFLPA 100
Cdd:PRK09471 22 ISFFMMRLAPGSP---FTGERTLPP--EVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVaSSFPV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 101 TLLLTGAALALILVTSLPLGIWAARHRDRLPDYIVRLIAFLGVSMPNFWLAFLLVMLFSVHLQWLPAMGY--GDWQHLIL 178
Cdd:PRK09471 97 SAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAITLHWLPGGGWngGALKFMIL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 179 PAVSIAFMSLAINARLLRASMLDAASQRHVIWARLRGLSARQVERRHILRNATLPVVTAMGMHIGELIGGTMIIENIFAW 258
Cdd:PRK09471 177 PMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIFGL 256
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 378981165 259 PGVGRYAVSAIFNRDYPVIQCFTLMMVTVFVLANLAVDVLNAALDPRLR 307
Cdd:PRK09471 257 PGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305
|
|
| PRK10914 |
PRK10914 |
dipeptide ABC transporter permease DppB; |
22-310 |
2.00e-47 |
|
dipeptide ABC transporter permease DppB;
Pssm-ID: 182834 [Multi-domain] Cd Length: 339 Bit Score: 162.29 E-value: 2.00e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 22 IIFLLLRLGAGDPALDYLRLSNLPPteEMVASTRELLGLNQPLAMQYLHWLWRALHLDFGLSYATQRPVLDDLLHFLPAT 101
Cdd:PRK10914 22 LTFAFVHMIPGDPVMIMAGERGISP--ERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKAT 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 102 LLLTGAALALILVTSLPLGIWAARHRDRLPDYIVRLIAFLGVSMPNFWLAFLLVMLFSVHLQWLPAMGY----------- 170
Cdd:PRK10914 100 LELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRvsdmvflddsn 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 171 ----------------GDWQ----HLILPAVSIAFMSLAINARLLRASMLDAASQRHVIWARLRGLSARQVERRHILRNA 230
Cdd:PRK10914 180 pltgfmlidtaiwgedGNFIdavaHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNA 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 231 TLPVVTAMGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVTVFVLANLAVDVLNAALDPRLRRHE 310
Cdd:PRK10914 260 MLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRHKK 339
|
|
| PRK15110 |
PRK15110 |
peptide ABC transporter permease SapB; |
68-304 |
4.32e-36 |
|
peptide ABC transporter permease SapB;
Pssm-ID: 185065 [Multi-domain] Cd Length: 321 Bit Score: 132.12 E-value: 4.32e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 68 YLHWLWRALHLDFGLSYATQRPVLDDLLHFLPATLLLTGAALALILVTSLPLGIWAARHRDRLPDYIVRLIAFLGVSMPN 147
Cdd:PRK15110 44 WVFWFNGLLHWDFGVSSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPV 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 148 FWLAFLLVMLFSVHLQWLPAMGYGD----------------W---------------QHLILPAVSIAFMSLAINARLLR 196
Cdd:PRK15110 124 FWLALLLTLFFSLTLGWLPVSGRFDllyevkpvtgfalidaWlsdspwrdemimsaiRHMILPVITLAVAPTTEVIRLMR 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 197 ASMLDAASQRHVIWARLRGLSARQVERRHILRNATLPVVTAMGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPV 276
Cdd:PRK15110 204 ISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAA 283
|
250 260
....*....|....*....|....*...
gi 378981165 277 IQCFTLMMVTVFVLANLAVDVLNAALDP 304
Cdd:PRK15110 284 ISAGVMVVGSLVIIVNVLSDILGAMANP 311
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
116-308 |
1.59e-33 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 121.64 E-value: 1.59e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 116 SLPLGIWAARHRDRLPDYIVRLIAFLGVSMPNFWLAFLLVMLFsvhlqwlpamGYGDWQHLILPAVSIAFMSLAINARLL 195
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA----------ILSILGHGILPAIILALLGWAGYARLI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 196 RASMLDAASQRHVIWARLRGLSARQVERRHILRNATLPVVTAMGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYP 275
Cdd:pfam00528 71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYP 150
|
170 180 190
....*....|....*....|....*....|...
gi 378981165 276 VIQCFTLMMVTVFVLANLAVDVLNAALDPRLRR 308
Cdd:pfam00528 151 EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| PRK15133 |
PRK15133 |
microcin C ABC transporter permease YejB; Provisional |
49-306 |
1.70e-22 |
|
microcin C ABC transporter permease YejB; Provisional
Pssm-ID: 185087 [Multi-domain] Cd Length: 364 Bit Score: 95.97 E-value: 1.70e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 49 EMVASTRELLGLNQPLAMQYLHWLWRALHLDFGLSYATQRPVLDDLLHFLPATLLLTGAALALILVTSLPLGIWAARHRD 128
Cdd:PRK15133 84 EVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVRNG 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 129 RLPDYIVRLIAFLGVSMPNFWLAFLLVMLFS--VHLQWLPAMG-----------YGD-----WqHLILPAVSIAFMSLAI 190
Cdd:PRK15133 164 SRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGlvsanfdslpwYQKitdylW-HITLPVLATVIGGFAA 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 191 NARLLRASMLDAASQRHVIWARLRGLSARQVERRHILRNATLPVVTAM-GMHIGELIGGTMIIENIFAWPGVGRYAVSAI 269
Cdd:PRK15133 243 LTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFpATFISMFFTGSLLIEVMFSLNGLGLLGYEAT 322
|
250 260 270
....*....|....*....|....*....|....*..
gi 378981165 270 FNRDYPVIQCFTLMMVTVFVLANLAVDVLNAALDPRL 306
Cdd:PRK15133 323 VSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
114-290 |
1.78e-17 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 78.86 E-value: 1.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 114 VTSLPLGIWAARHRDRLpDYIVRLIAFLGVSMPNFWLAFLLVMLFSVHLQWlpamgyGDWQHLILPAVSIAFMSLAINAR 193
Cdd:cd06261 17 VLGLLLGIILARKRGKL-DRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------GILPGLGLPALILALLLIAPFAR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 194 LLRASMLDAASQRHVIWARLRGLSARQVERRHILRNATLPVVTAMGMHIGELIGGTMIIENIFA----WPGVGRYAVSAI 269
Cdd:cd06261 90 LIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGgeapGPGTGLLLIFAI 169
|
170 180
....*....|....*....|.
gi 378981165 270 FNRDYPVIQCFTLMMVTVFVL 290
Cdd:cd06261 170 LFPGDLGVAAAVALILLLLSL 190
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
114-246 |
3.93e-05 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 44.33 E-value: 3.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 114 VTSLPLGIWAARHRDRLPDYIVRLI-AFLgvSMPNFWLAFLLVMLFsvhlqwlpamGYGdwqhLILPAVSIAFMSLAINA 192
Cdd:COG1173 94 VIGVLLGLLAGYFGGWVDAVLMRLVdVLL--AFPSLLLAIALVAVL----------GPG----LLNVILALGLTGWPGYA 157
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 378981165 193 RLLRASMLDAASQRHVIWARLRGLSARQVERRHILRNATLPVVTAMGMHIGELI 246
Cdd:COG1173 158 RLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAI 211
|
|
| BPD_transp_1_N |
pfam19300 |
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ... |
1-99 |
1.16e-03 |
|
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.
Pssm-ID: 437132 [Multi-domain] Cd Length: 114 Bit Score: 37.97 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 378981165 1 MLRYILRRLLLLIPLLLAASAIIFLLLRLGAGDPAldylRLS---NLPPteEMVASTRELLGLNQPLAMQYLHWLWRAL- 76
Cdd:pfam19300 1 MLRFLVRRTLGAVVILLIISAVTFFLFYAIPRDPA----RLAcgkNCTP--ETLALIRHNLGLDKPIPVQYWHFLSGIFa 74
|
90 100 110
....*....|....*....|....*....|....
gi 378981165 77 --------HLD---FGLSYATQRPVLDDLLHFLP 99
Cdd:pfam19300 75 grdfgavgHCPapcLGYSFANNEPVWDTIMDRFP 108
|
|
| |
