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Conserved domains on  [gi|1829765847|ref|YP_009744349|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Xylaria hypoxylon]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Oxidored_q2 super family cl00492
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
3-86 5.47e-17

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


The actual alignment was detected with superfamily member MTH00180:

Pssm-ID: 444937  Cd Length: 99  Bit Score: 68.91  E-value: 5.47e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829765847  3 ITLILFLIGILGFVLNRKNIILMLISIEIMLLAITFLILVSSLNIDDIIGQTYAIYIIAVAGAESAIGLGILVAFYRLRG 82
Cdd:MTH00180   8 VGIILFILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRG 87

                 ....
gi 1829765847 83 SIAI 86
Cdd:MTH00180  88 TIAV 91
 
Name Accession Description Interval E-value
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
3-86 5.47e-17

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 68.91  E-value: 5.47e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829765847  3 ITLILFLIGILGFVLNRKNIILMLISIEIMLLAITFLILVSSLNIDDIIGQTYAIYIIAVAGAESAIGLGILVAFYRLRG 82
Cdd:MTH00180   8 VGIILFILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRG 87

                 ....
gi 1829765847 83 SIAI 86
Cdd:MTH00180  88 TIAV 91
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
6-87 3.30e-15

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 64.31  E-value: 3.30e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829765847  6 ILFLIGILGfVLNRKNIILMLISIEIMLLAITFLILVSSLNIDDIIGQTYAIYIIAVAGAESAIGLGILVAFYRLRGSIA 85
Cdd:COG0713   12 ILFAIGLYG-VLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLGDLDGQVFALFVIAVAAAEVAVGLAIIVALYRNRGTID 90

                 ..
gi 1829765847 86 IE 87
Cdd:COG0713   91 VD 92
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
3-87 3.77e-09

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 48.71  E-value: 3.77e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829765847  3 ITLILFLIGILGfVLNRKNIILMLISIEIMLLAITFLILVSSLNIDDIIGQTYAIYIIAVAGAESAIGLGILVAFYRLRG 82
Cdd:pfam00420  5 LSGLLFLIGLYG-LLLRRNLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHG 83

                 ....*
gi 1829765847 83 SIAIE 87
Cdd:pfam00420 84 TDDVD 88
 
Name Accession Description Interval E-value
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
3-86 5.47e-17

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 68.91  E-value: 5.47e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829765847  3 ITLILFLIGILGFVLNRKNIILMLISIEIMLLAITFLILVSSLNIDDIIGQTYAIYIIAVAGAESAIGLGILVAFYRLRG 82
Cdd:MTH00180   8 VGIILFILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRG 87

                 ....
gi 1829765847 83 SIAI 86
Cdd:MTH00180  88 TIAV 91
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
5-87 3.70e-16

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 66.74  E-value: 3.70e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829765847   5 LILFLIGILGfVLNRKNIILMLISIEIMLLAITFLILVSSLNIDDIIGQTYAIYIIAVAGAESAIGLGILVAFYRLRGSI 84
Cdd:PRK05715   12 AILFCIGLVG-LLLRRNAIVVLMSIELMLNAVNLNFVAFSSYLGDLDGQVFAFFVITVAAAEAAIGLAILLQLYRNRGTI 90

                  ...
gi 1829765847  85 AIE 87
Cdd:PRK05715   91 DVD 93
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
6-87 3.30e-15

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 64.31  E-value: 3.30e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829765847  6 ILFLIGILGfVLNRKNIILMLISIEIMLLAITFLILVSSLNIDDIIGQTYAIYIIAVAGAESAIGLGILVAFYRLRGSIA 85
Cdd:COG0713   12 ILFAIGLYG-VLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLGDLDGQVFALFVIAVAAAEVAVGLAIIVALYRNRGTID 90

                 ..
gi 1829765847 86 IE 87
Cdd:COG0713   91 VD 92
ND4L MTH00001
NADH dehydrogenase subunit 4L; Provisional
3-86 5.24e-15

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177099  Cd Length: 99  Bit Score: 63.93  E-value: 5.24e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829765847  3 ITLILFLIGILGFVLNRKNIILMLISIEIMLLAITFLILVSSLNIDDIIGQTYAIYIIAVAGAESAIGLGILVAFYRLRG 82
Cdd:MTH00001   8 LVVILFLLGIWGIILNRGHFIIMLVSIELVLLSTFFLFLINSIEIDLLIEQIFTIMGLTIAAAESAIGLAIMVAYYRIRG 87

                 ....
gi 1829765847 83 SIAI 86
Cdd:MTH00001  88 TISL 91
ndhE CHL00015
NADH dehydrogenase subunit 4L
7-87 3.55e-09

NADH dehydrogenase subunit 4L


Pssm-ID: 176958  Cd Length: 101  Bit Score: 49.23  E-value: 3.55e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829765847   7 LFLIGILGFVLNRkNIILMLISIEIMLLA--ITFLILVSSLNIDDIIGQTYAIYIIAVAGAESAIGLGILVAFYRLRGSI 84
Cdd:CHL00015   13 LFSIGIYGLITSR-NMVRALMCLELILNAvnINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAIVSSIYRNRKST 91

                  ...
gi 1829765847  85 AIE 87
Cdd:CHL00015   92 RIN 94
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
3-87 3.77e-09

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 48.71  E-value: 3.77e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829765847  3 ITLILFLIGILGfVLNRKNIILMLISIEIMLLAITFLILVSSLNIDDIIGQTYAIYIIAVAGAESAIGLGILVAFYRLRG 82
Cdd:pfam00420  5 LSGLLFLIGLYG-LLLRRNLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHG 83

                 ....*
gi 1829765847 83 SIAIE 87
Cdd:pfam00420 84 TDDVD 88
ND4L MTH00192
NADH dehydrogenase subunit 4L; Provisional
3-87 5.94e-09

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177240  Cd Length: 99  Bit Score: 48.38  E-value: 5.94e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829765847  3 ITLILFLIGILGFVLNRKNIILMLISIEIMLLAITFLILVSSLNIDDIIGQTYAIYIIAVAGAESAIGLGILVAFYRLRG 82
Cdd:MTH00192   8 VSIILFTTGVSGIIINKNNIILILMSIELILLAISYLLIVYSVTLDNLLGIIFSLMVLTVAAAESAIGLAILVAYFRLTG 87

                 ....*
gi 1829765847 83 SIAIE 87
Cdd:MTH00192  88 TITIK 92
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
5-83 1.47e-05

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 39.83  E-value: 1.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829765847  5 LILFLIGILGFVLNRKNIILMLISIEIMLLAITFLILVSSLNIDdiiGQTYAIYIIAVAGA-ESAIGLGILVAFYRLRGS 83
Cdd:MTH00149  10 LFGFLMGVFALLFQYKHLLSILLSLEALMLSLLVMMFSSSGLIS---FSSYLFLIILTFGAcEASLGLSLLVSLIRLHGN 86
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
1-83 4.09e-05

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 38.39  E-value: 4.09e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829765847  1 MNITLILFLIGILGFVLNRKNIILMLISIEIMLLAITFLILVSSLNIDDIIGQTYAIYIIAVAGAESAIGLGILVAFYRL 80
Cdd:MTH00181   2 MFVFISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSSSSMLMFGLILLTFSACEAVLGLSLLVATNRT 81

                 ...
gi 1829765847 81 RGS 83
Cdd:MTH00181  82 HGS 84
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
1-83 4.83e-05

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 38.29  E-value: 4.83e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829765847  1 MNITLIL-FLIGILGFVLNRKNIILMLISIEIMLLAITFLILVSSLNIDDIIGQTYAIYIIAVAGAESAIGLGILVAFYR 79
Cdd:MTH00125   4 THFSLYTaFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVATTR 83

                 ....
gi 1829765847 80 LRGS 83
Cdd:MTH00125  84 THGS 87
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
1-83 2.87e-03

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 33.59  E-value: 2.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1829765847  1 MNITLILFLIGILGFVLNRKNIILMLISIEIMLLAItFLILVSSLNIDDIIGQTYAIYIIAVAGaESAIGLGILVAFYRL 80
Cdd:MTH00162   4 LLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSL-FFLLFLYLSFFNYELYFLLFFLTFSVC-EGALGLSILVSMIRS 81

                 ...
gi 1829765847 81 RGS 83
Cdd:MTH00162  82 HGN 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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