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Conserved domains on  [gi|94541114|ref|YP_588456|]
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uncharacterized protein YobH [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

YobH family protein( domain architecture ID 10623724)

YobH family protein similar to Escherichia coli protein YobH

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YobH pfam13996
YobH-like protein; The YobH-like protein family includes the YobH protein from E. coli, which ...
 2-71 6.62e-37

YobH-like protein; The YobH-like protein family includes the YobH protein from E. coli, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length. There are two conserved sequence motifs: GYG and GLGL.


:

Pssm-ID: 433635  Cd Length: 70  Bit Score: 118.35  E-value: 6.62e-37
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94541114    2 RFIIRTVMLIALVWIGLLLSGYGVLIGSKENAAGLGLQCTYLTARGTSTVQYLHTKSGFLGITDCPLLRK 71
Cdd:pfam13996  1 RLIIRTVILIALLWIGLLLSGYGVLIGSKENAAGLGLQCQYLTARGTSTAQYVHTDSGVIGVSDCPLLRK 70
 
Name Accession Description Interval E-value
YobH pfam13996
YobH-like protein; The YobH-like protein family includes the YobH protein from E. coli, which ...
 2-71 6.62e-37

YobH-like protein; The YobH-like protein family includes the YobH protein from E. coli, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length. There are two conserved sequence motifs: GYG and GLGL.


Pssm-ID: 433635  Cd Length: 70  Bit Score: 118.35  E-value: 6.62e-37
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94541114    2 RFIIRTVMLIALVWIGLLLSGYGVLIGSKENAAGLGLQCTYLTARGTSTVQYLHTKSGFLGITDCPLLRK 71
Cdd:pfam13996  1 RLIIRTVILIALLWIGLLLSGYGVLIGSKENAAGLGLQCQYLTARGTSTAQYVHTDSGVIGVSDCPLLRK 70
 
Name Accession Description Interval E-value
YobH pfam13996
YobH-like protein; The YobH-like protein family includes the YobH protein from E. coli, which ...
 2-71 6.62e-37

YobH-like protein; The YobH-like protein family includes the YobH protein from E. coli, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length. There are two conserved sequence motifs: GYG and GLGL.


Pssm-ID: 433635  Cd Length: 70  Bit Score: 118.35  E-value: 6.62e-37
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94541114    2 RFIIRTVMLIALVWIGLLLSGYGVLIGSKENAAGLGLQCTYLTARGTSTVQYLHTKSGFLGITDCPLLRK 71
Cdd:pfam13996  1 RLIIRTVILIALLWIGLLLSGYGVLIGSKENAAGLGLQCQYLTARGTSTAQYVHTDSGVIGVSDCPLLRK 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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