ID 689289 - BioProject

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Accession: PRJEB42319 ID: 689289

EMG produced TPA metagenomics assembly of PRJDB4115 data set (Metgenomic analysis of human saliva microbiome from healthy subjects).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJDB4115, and was assembled with SPAdes v3. More...

Accession	PRJEB42319
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 3-Jan-2021 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	5425
WGS master	28
Publications
PubMed	1
PMC	1
Other datasets
BioSample	28
Assembly	28

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

28
28

Assembly	WGS	BioSample	Taxonomy
GCA_905369945.1	CAJPJJ000000000	SAMEA8391442	Actinomyces graevenitzii
GCA_905369875.1	CAJPJE000000000	SAMEA8391435	Actinomyces sp. ICM47
GCA_905370345.1	CAJPKE000000000	SAMEA8391450	Candidatus Saccharibacteria bacterium UBA6209
GCA_905370315.1	CAJPJZ000000000	SAMEA8391445	Carnobacterium maltaromaticum
GCA_905369865.1	CAJPJQ000000000	SAMEA8391436	Gemella haemolysans
GCA_905370235.1	CAJPKG000000000	SAMEA8391444	Haemophilus parainfluenzae
GCA_905369925.1	CAJPJH000000000	SAMEA8391434	Haemophilus sp. HMSC068C11
GCA_905369895.1	CAJPJD000000000	SAMEA8391424	Neisseria flavescens
GCA_905370215.1	CAJPJW000000000	SAMEA8391443	Neisseria subflava
GCA_905369765.1	CAJPJV000000000	SAMEA8391440	Prevotella jejuni
GCA_905369835.1	CAJPJS000000000	SAMEA8391430	Prevotella melaninogenica
GCA_905369755.1	CAJPJK000000000	SAMEA8391425	Prevotella melaninogenica
GCA_905369915.1	CAJPJT000000000	SAMEA8391437	Prevotella melaninogenica
GCA_905369805.1	CAJPJO000000000	SAMEA8391432	Prevotella melaninogenica
GCA_905369845.1	CAJPJI000000000	SAMEA8391439	Prevotella pallens
GCA_905369775.1	CAJPJR000000000	SAMEA8391438	Prevotellaceae bacterium UBA1746
GCA_905369905.1	CAJPJC000000000	SAMEA8391431	Rothia mucilaginosa
GCA_905369935.1	CAJPJP000000000	SAMEA8391423	Rothia mucilaginosa
GCA_905369815.1	CAJPJG000000000	SAMEA8391433	Schaalia odontolytica
GCA_905370255.1	CAJPKC000000000	SAMEA8391448	Streptococcus oralis
GCA_905369855.1	CAJPJN000000000	SAMEA8391429	Streptococcus oralis
GCA_905369825.1	CAJPJM000000000	SAMEA8391428	Streptococcus oralis
GCA_905370275.1	CAJPKA000000000	SAMEA8391446	Streptococcus parasanguinis
GCA_905370295.1	CAJPKB000000000	SAMEA8391449	Streptococcus salivarius
GCA_905370335.1	CAJPKF000000000	SAMEA8391447	Streptococcus sanguinis
GCA_905369785.1	CAJPJL000000000	SAMEA8391441	Veillonella dispar
GCA_905369795.1	CAJPJU000000000	SAMEA8391427	uncultured Actinomyces sp.
GCA_905369885.1	CAJPJF000000000	SAMEA8391426	uncultured Actinomyces sp.

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EMG produced TPA metagenomics assembly of PRJDB4115 data set (Metgenomic analysis of human saliva microbiome from healthy subjects).

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