metagenome-assembled genome

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Streptococcus oralis
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus

Attributes

collection date	not provided
broad-scale environmental context	human-associated habitat
local-scale environmental context	human oral cavity
environmental medium	saliva
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	Human saliva
project name	Human Oral MAGs
sample name	DRR046102-mag-bin.5
ENA first public	2021-03-23
ENA last update	2021-03-22
ENA-CHECKLIST	ERC000047
External Id	SAMEA8391448
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2021-03-23T08:57:14Z
INSDC last update	2021-03-22T00:40:35Z
INSDC status	public
Submitter Id	DRR046102-mag-bin.5
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spades_v3.14.1
binning parameters	default
binning software	MetaWRAP v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	53.06
completeness software	CheckM v1.1.3
contamination score	1.72
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human oral metagenome
sample derived from	DRS049752
sequencing method	Illumina
taxonomic identity marker	multi-marker approach