ID 840664 - BioProject

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Accession: PRJEB52514 ID: 840664

EMG produced TPA metagenomics assembly of PRJNA677897 data set (Whole metegenome sequencing of the Sicilian Black pig fecal microbiome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA677897, and was assembled with metaSPAdes v3. More...

Accession	PRJEB52514
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 20-May-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	275
WGS master	32
Publications
PubMed	1
PMC	1
Other datasets
BioSample	32
Assembly	32

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

32
32

Assembly	WGS	BioSample	Taxonomy
GCA_945222375.1	CALYNO000000000	SAMEA110271903	Lactobacillus amylovorus
GCA_945228925.1	CALYOI000000000	SAMEA110271885	Methanobrevibacter gottschalkii
GCA_945228905.1	CALYOH000000000	SAMEA110271891	uncultured Bacillales bacterium
GCA_945225935.1	CALYOA000000000	SAMEA110271883	uncultured Bacteroidales bacterium
GCA_945227115.1	CALYOE000000000	SAMEA110271882	uncultured Bacteroidales bacterium
GCA_945214255.1	CALYNH000000000	SAMEA110271888	uncultured Campylobacter sp.
GCA_945224895.1	CALYNW000000000	SAMEA110271902	uncultured Clostridia bacterium
GCA_945221685.1	CALYNN000000000	SAMEA110271904	uncultured Clostridia bacterium
GCA_945229175.1	CALYOK000000000	SAMEA110271875	uncultured Clostridia bacterium
GCA_945225845.1	CALYNZ000000000	SAMEA110271884	uncultured Clostridia bacterium
GCA_945227155.1	CALYOF000000000	SAMEA110271878	uncultured Clostridia bacterium
GCA_945222445.1	CALYNP000000000	SAMEA110271898	uncultured Clostridia bacterium
GCA_945223685.1	CALYNV000000000	SAMEA110271879	uncultured Clostridia bacterium
GCA_945227095.1	CALYOC000000000	SAMEA110271877	uncultured Clostridia bacterium
GCA_945225965.1	CALYOB000000000	SAMEA110271890	uncultured Clostridia bacterium
GCA_945216135.1	CALYNJ000000000	SAMEA110271876	uncultured Coriobacteriaceae bacterium
GCA_945222755.1	CALYNQ000000000	SAMEA110271905	uncultured Erysipelotrichaceae bacterium
GCA_945222725.1	CALYNS000000000	SAMEA110271897	uncultured Erysipelotrichaceae bacterium
GCA_945217955.1	CALYNK000000000	SAMEA110271893	uncultured Erysipelotrichaceae bacterium
GCA_945223065.1	CALYNU000000000	SAMEA110271900	uncultured Eubacterium sp.
GCA_945215975.1	CALYNI000000000	SAMEA110271881	uncultured Lachnospiraceae bacterium
GCA_945222775.1	CALYNR000000000	SAMEA110271906	uncultured Lachnospiraceae bacterium
GCA_945227065.1	CALYOD000000000	SAMEA110271880	uncultured Lachnospiraceae bacterium
GCA_945229155.1	CALYOJ000000000	SAMEA110271896	uncultured Lachnospiraceae bacterium
GCA_945236785.1	CALYOM000000000	SAMEA110271899	uncultured Lactobacillus sp.
GCA_945228885.1	CALYOG000000000	SAMEA110271894	uncultured Methanosphaera sp.
GCA_945231345.1	CALYOL000000000	SAMEA110271892	uncultured Porphyromonadaceae bacterium
GCA_945217795.1	CALYNL000000000	SAMEA110271889	uncultured Prevotella sp.
GCA_945218125.1	CALYNM000000000	SAMEA110271895	uncultured Prevotellaceae bacterium
GCA_945225035.1	CALYNX000000000	SAMEA110271887	uncultured Solobacterium sp.
GCA_945222705.1	CALYNT000000000	SAMEA110271901	uncultured Solobacterium sp.
GCA_945225015.1	CALYNY000000000	SAMEA110271886	uncultured bacterium

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EMG produced TPA metagenomics assembly of PRJNA677897 data set (Whole metegenome sequencing of the Sicilian Black pig fecal microbiome).

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