U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-assembled genome: SRR13040390_bin.5_metaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA110271903; SRA: ERS12369517
Organism
Lactobacillus amylovorus
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
Attributes
collection date2018-01-01
broad-scale environmental contextPig digestive system
local-scale environmental contextColon
environmental mediumFeces
geographic locationItaly
investigation typemetagenome-assembled genome
isolation sourcepig gut metagenome
project nameIn this study we report fort the first time the characterization of the fecal microbiome of an ancient autochthonous pig breed that lives in the woods of the Nebrodi and Madonie mountains on the northern coast of the Mediterranean island of Sicily (Italy). Using whole-metagenome shotgun sequencing (WGS) we provide a detailed taxonomic and functional profiling of the microbial community associated with this rare and endangered-maintained pig breed.
sample nameSRR13040390_bin.5_metaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-07
ENA-LAST-UPDATE2022-07-07
External IdSAMEA110271903
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-07-07T16:19:49Z
INSDC last update2022-07-07T16:19:49Z
INSDC statuspublic
Submitter IdSRR13040390_bin.5_metaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score98.08
completeness softwareCheckM
contamination score0.0
geographic location (latitude)38.11
geographic location (longitude)15.33
metagenomic sourcepig gut metagenome
sample derived fromSAMN16776299
sequencing methodNextSeq 500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13040390 of study SRP292297.

BioProject
PRJEB52514
Retrieve all samples from this project

Submission
EBI; 2022-07-12
Accession:
SAMEA110271903
ID:
29651016

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center