ID 879027 - BioProject

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Accession: PRJEB55875 ID: 879027

EMG produced TPA metagenomics assembly of PRJNA473429 data set (Effect of Down Syndrome genotype on mouse microbiome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA473429, and was assembled with metaSPAdes v3. More...

Accession	PRJEB55875
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 10-Sep-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	666
WGS master	95
Publications
PubMed	1
PMC	1
Other datasets
BioSample	95
Assembly	95

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

95
95

Assembly	WGS	BioSample	Taxonomy
GCA_947074935.1	CAMTRR000000000	SAMEA111477501	Bacteroides acidifaciens
GCA_947074685.1	CAMTQM000000000	SAMEA111477522	Blautia coccoides
GCA_947074455.1	CAMTPP000000000	SAMEA111477490	Escherichia coli
GCA_947074705.1	CAMTQP000000000	SAMEA111477517	Lactobacillus taiwanensis
GCA_947074665.1	CAMTQK000000000	SAMEA111477518	Muribaculum intestinale
GCA_947075115.1	CAMTSG000000000	SAMEA111477471	Thomasclavelia cocleata
GCA_947074675.1	CAMTQL000000000	SAMEA111477527	Turicimonas muris
GCA_947074615.1	CAMTPZ000000000	SAMEA111477475	uncultured Alistipes sp.
GCA_947075065.1	CAMTRK000000000	SAMEA111477456	uncultured Alistipes sp.
GCA_947074535.1	CAMTQE000000000	SAMEA111477523	uncultured Anaerotruncus sp.
GCA_947074405.1	CAMTPT000000000	SAMEA111477481	uncultured Clostridia bacterium
GCA_947074605.1	CAMTQI000000000	SAMEA111477514	uncultured Clostridia bacterium
GCA_947074625.1	CAMTPY000000000	SAMEA111477512	uncultured Clostridia bacterium
GCA_947074365.1	CAMTPI000000000	SAMEA111477544	uncultured Clostridia bacterium
GCA_947074525.1	CAMTQF000000000	SAMEA111477477	uncultured Clostridia bacterium
GCA_947075045.1	CAMTRO000000000	SAMEA111477454	uncultured Clostridia bacterium
GCA_947075105.1	CAMTSE000000000	SAMEA111477468	uncultured Clostridia bacterium
GCA_947075145.1	CAMTSF000000000	SAMEA111477491	uncultured Clostridia bacterium
GCA_947074585.1	CAMTQA000000000	SAMEA111477478	uncultured Clostridia bacterium
GCA_947074995.1	CAMTRX000000000	SAMEA111477469	uncultured Clostridia bacterium
GCA_947074645.1	CAMTQO000000000	SAMEA111477524	uncultured Clostridiaceae bacterium
GCA_947074925.1	CAMTRV000000000	SAMEA111477505	uncultured Clostridium sp.
GCA_947075295.1	CAMTSX000000000	SAMEA111477504	uncultured Clostridium sp.
GCA_947075285.1	CAMTSW000000000	SAMEA111477506	uncultured Clostridium sp.
GCA_947075075.1	CAMTRM000000000	SAMEA111477500	uncultured Coriobacteriaceae bacterium
GCA_947074435.1	CAMTPW000000000	SAMEA111477486	uncultured Desulfovibrio sp.
GCA_947074555.1	CAMTQC000000000	SAMEA111477508	uncultured Dorea sp.
GCA_947075095.1	CAMTSD000000000	SAMEA111477467	uncultured Erysipelotrichaceae bacterium
GCA_947075035.1	CAMTRT000000000	SAMEA111477498	uncultured Eubacterium sp.
GCA_947074635.1	CAMTRB000000000	SAMEA111477533	uncultured Eubacterium sp.
GCA_947074505.1	CAMTPS000000000	SAMEA111477545	uncultured Eubacterium sp.
GCA_947074655.1	CAMTQV000000000	SAMEA111477531	uncultured Firmicutes bacterium
GCA_947075265.1	CAMTSR000000000	SAMEA111477489	uncultured Firmicutes bacterium
GCA_947074475.1	CAMTPU000000000	SAMEA111477459	uncultured Hungatella sp.
GCA_947074965.1	CAMTRN000000000	SAMEA111477499	uncultured Lachnoclostridium sp.
GCA_947074835.1	CAMTRD000000000	SAMEA111477537	uncultured Lachnoclostridium sp.
GCA_947074885.1	CAMTRQ000000000	SAMEA111477457	uncultured Lachnoclostridium sp.
GCA_947074855.1	CAMTRF000000000	SAMEA111477542	uncultured Lachnoclostridium sp.
GCA_947074945.1	CAMTRU000000000	SAMEA111477511	uncultured Lachnospiraceae bacterium
GCA_947075255.1	CAMTSV000000000	SAMEA111477461	uncultured Lachnospiraceae bacterium
GCA_947075135.1	CAMTSL000000000	SAMEA111477495	uncultured Lachnospiraceae bacterium
GCA_947074865.1	CAMTRG000000000	SAMEA111477547	uncultured Lachnospiraceae bacterium
GCA_947074415.1	CAMTPO000000000	SAMEA111477479	uncultured Lachnospiraceae bacterium
GCA_947075215.1	CAMTST000000000	SAMEA111477492	uncultured Lachnospiraceae bacterium
GCA_947074985.1	CAMTRZ000000000	SAMEA111477476	uncultured Lachnospiraceae bacterium
GCA_947075155.1	CAMTSJ000000000	SAMEA111477465	uncultured Lachnospiraceae bacterium
GCA_947075305.1	CAMTSY000000000	SAMEA111477497	uncultured Lachnospiraceae bacterium
GCA_947074495.1	CAMTPQ000000000	SAMEA111477482	uncultured Lachnospiraceae bacterium
GCA_947075085.1	CAMTRW000000000	SAMEA111477494	uncultured Lachnospiraceae bacterium
GCA_947074975.1	CAMTSA000000000	SAMEA111477493	uncultured Lachnospiraceae bacterium
GCA_947075275.1	CAMTSS000000000	SAMEA111477474	uncultured Lachnospiraceae bacterium
GCA_947074845.1	CAMTRA000000000	SAMEA111477519	uncultured Lachnospiraceae bacterium
GCA_947075015.1	CAMTRY000000000	SAMEA111477466	uncultured Lachnospiraceae bacterium
GCA_947075175.1	CAMTSK000000000	SAMEA111477462	uncultured Lachnospiraceae bacterium
GCA_947074805.1	CAMTQR000000000	SAMEA111477535	uncultured Lachnospiraceae bacterium
GCA_947074715.1	CAMTQT000000000	SAMEA111477520	uncultured Lachnospiraceae bacterium
GCA_947075185.1	CAMTSP000000000	SAMEA111477473	uncultured Lachnospiraceae bacterium
GCA_947075225.1	CAMTSQ000000000	SAMEA111477516	uncultured Lachnospiraceae bacterium
GCA_947075195.1	CAMTSU000000000	SAMEA111477463	uncultured Lachnospiraceae bacterium
GCA_947074895.1	CAMTRS000000000	SAMEA111477502	uncultured Lactobacillus sp.
GCA_947074425.1	CAMTPK000000000	SAMEA111477543	uncultured Muribaculaceae bacterium
GCA_947075205.1	CAMTSN000000000	SAMEA111477455	uncultured Muribaculaceae bacterium
GCA_947074765.1	CAMTQQ000000000	SAMEA111477539	uncultured Muribaculaceae bacterium
GCA_947074825.1	CAMTQX000000000	SAMEA111477538	uncultured Muribaculaceae bacterium
GCA_947074545.1	CAMTQB000000000	SAMEA111477510	uncultured Muribaculaceae bacterium
GCA_947074875.1	CAMTRH000000000	SAMEA111477541	uncultured Muribaculaceae bacterium
GCA_947074575.1	CAMTQG000000000	SAMEA111477513	uncultured Muribaculaceae bacterium
GCA_947074695.1	CAMTQJ000000000	SAMEA111477525	uncultured Muribaculaceae bacterium
GCA_947075235.1	CAMTSM000000000	SAMEA111477496	uncultured Muribaculaceae bacterium
GCA_947074815.1	CAMTQY000000000	SAMEA111477526	uncultured Mycoplasmatota bacterium
GCA_947074485.1	CAMTPR000000000	SAMEA111477480	uncultured Oscillibacter sp.
GCA_947074515.1	CAMTPX000000000	SAMEA111477483	uncultured Oscillibacter sp.
GCA_947075055.1	CAMTRL000000000	SAMEA111477464	uncultured Porphyromonadaceae bacterium
GCA_947075165.1	CAMTSH000000000	SAMEA111477472	uncultured Porphyromonadaceae bacterium
GCA_947074955.1	CAMTRJ000000000	SAMEA111477488	uncultured Porphyromonadaceae bacterium
GCA_947074385.1	CAMTPJ000000000	SAMEA111477487	uncultured Porphyromonadaceae bacterium
GCA_947074595.1	CAMTQD000000000	SAMEA111477521	uncultured Porphyromonadaceae bacterium
GCA_947074795.1	CAMTQU000000000	SAMEA111477534	uncultured Porphyromonadaceae bacterium
GCA_947074745.1	CAMTQS000000000	SAMEA111477515	uncultured Porphyromonadaceae bacterium
GCA_947075025.1	CAMTRI000000000	SAMEA111477460	uncultured Porphyromonadaceae bacterium
GCA_947074375.1	CAMTPM000000000	SAMEA111477546	uncultured Porphyromonadaceae bacterium
GCA_947074395.1	CAMTPL000000000	SAMEA111477458	uncultured Porphyromonadaceae bacterium
GCA_947074785.1	CAMTQZ000000000	SAMEA111477540	uncultured Porphyromonadaceae bacterium
GCA_947074465.1	CAMTPN000000000	SAMEA111477484	uncultured Porphyromonadaceae bacterium
GCA_947075245.1	CAMTSO000000000	SAMEA111477530	uncultured Porphyromonadaceae bacterium
GCA_947074905.1	CAMTRP000000000	SAMEA111477507	uncultured bacterium
GCA_947074915.1	CAMTSB000000000	SAMEA111477453	uncultured bacterium
GCA_947074565.1	CAMTQH000000000	SAMEA111477509	uncultured bacterium
GCA_947074775.1	CAMTRC000000000	SAMEA111477532	uncultured bacterium
GCA_947074735.1	CAMTQW000000000	SAMEA111477529	uncultured bacterium
GCA_947074755.1	CAMTRE000000000	SAMEA111477528	uncultured bacterium
GCA_947074725.1	CAMTQN000000000	SAMEA111477536	uncultured bacterium
GCA_947075005.1	CAMTSC000000000	SAMEA111477503	uncultured bacterium
GCA_947074445.1	CAMTPV000000000	SAMEA111477485	uncultured bacterium
GCA_947075125.1	CAMTSI000000000	SAMEA111477470	uncultured bacterium

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EMG produced TPA metagenomics assembly of PRJNA473429 data set (Effect of Down Syndrome genotype on mouse microbiome).

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