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Metagenome-assembled genome: SRR13169514_bin.4_metawrap_v1.3_MAG

Identifiers
BioSample: SAMEA111477536; SRA: ERS13571572
Organism
uncultured bacterium
cellular organisms; Bacteria; environmental samples
Attributes
broad-scale environmental contextmouse digestive system
collection date2015-12-17
environmental mediumfeces
geographic locationSpain
investigation typemetagenome-assembled genome
isolation sourcemouse gut metagenome
project nameEffect of Down Syndrome genotype on mouse microbiome
sample nameSRR13169514_bin.4_metawrap_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-10-17
ENA-LAST-UPDATE2022-10-17
External IdSAMEA111477536
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-10-17T00:34:45Z
INSDC last update2022-10-17T00:34:45Z
INSDC statuspublic
Submitter IdSRR13169514_bin.4_metawrap_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetawrap v1.3
broker nameEMG broker account, EMBL-EBI
completeness score98.1
completeness softwareCheckM
contamination score0.63
geographic location (latitude)41.39
geographic location (longitude)2.17
local environmental contextdigestive tube
metagenomic sourcemouse gut metagenome
sample derived fromSAMN09273613
sequencing methodIllumina HiSeq 2500
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__;c__;o__;f__;g__;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13169514 of study SRP295175.

BioProject
PRJEB55875
Retrieve all samples from this project

Submission
EBI; 2022-10-18
Accession:
SAMEA111477536
ID:
31337021

BioProject Nucleotide

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