ID 883904 - BioProject

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Accession: PRJEB56244 ID: 883904

EMG produced TPA metagenomics assembly of PRJNA704567 data set (Nicotinamide Riboside-Conditioned Microbiota Deflects High-Fat Diet-Induced Weight Gain in Mice).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA704567, and was assembled with metaSPAdes v3. More...

Accession	PRJEB56244
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 24-Sep-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1802
WGS master	67
Publications
PubMed	1
PMC	1
Other datasets
BioSample	67
Assembly	67

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

67
67

Assembly	WGS	BioSample	Taxonomy
GCA_947101715.1	CAMUTI000000000	SAMEA111497048	Akkermansia muciniphila
GCA_947100925.1	CAMUSJ000000000	SAMEA111497069	Anaerotruncus colihominis
GCA_947101095.1	CAMUSS000000000	SAMEA111497108	Angelakisella massiliensis
GCA_947100995.1	CAMUSL000000000	SAMEA111497057	Bacteroides thetaiotaomicron
GCA_947101405.1	CAMUSV000000000	SAMEA111497101	Dubosiella newyorkensis
GCA_947101385.1	CAMUSU000000000	SAMEA111497090	Lactobacillus johnsonii
GCA_947101685.1	CAMUTJ000000000	SAMEA111497091	Lactococcus lactis
GCA_947101775.1	CAMUUF000000000	SAMEA111497102	Parasutterella excrementihominis
GCA_947101705.1	CAMUTX000000000	SAMEA111497085	Romboutsia timonensis
GCA_947101885.1	CAMUUP000000000	SAMEA111497073	Romboutsia timonensis
GCA_947101835.1	CAMUUL000000000	SAMEA111497089	Romboutsia timonensis
GCA_947101765.1	CAMUUE000000000	SAMEA111497056	Thomasclavelia cocleata
GCA_947101895.1	CAMUUO000000000	SAMEA111497060	uncultured Alistipes sp.
GCA_947101795.1	CAMUUH000000000	SAMEA111497087	uncultured Anaerotruncus sp.
GCA_947101865.1	CAMUUG000000000	SAMEA111497053	uncultured Clostridia bacterium
GCA_947101985.1	CAMUUW000000000	SAMEA111497106	uncultured Clostridia bacterium
GCA_947101335.1	CAMUTB000000000	SAMEA111497105	uncultured Clostridia bacterium
GCA_947102065.1	CAMUUX000000000	SAMEA111497103	uncultured Clostridia bacterium
GCA_947101665.1	CAMUTM000000000	SAMEA111497104	uncultured Clostridia bacterium
GCA_947101005.1	CAMUSP000000000	SAMEA111497051	uncultured Clostridia bacterium
GCA_947101375.1	CAMUSW000000000	SAMEA111497061	uncultured Clostridia bacterium
GCA_947101615.1	CAMUTT000000000	SAMEA111497068	uncultured Clostridia bacterium
GCA_947101345.1	CAMUSZ000000000	SAMEA111497059	uncultured Clostridia bacterium
GCA_947101325.1	CAMUST000000000	SAMEA111497077	uncultured Clostridia bacterium
GCA_947101695.1	CAMUTS000000000	SAMEA111497094	uncultured Clostridia bacterium
GCA_947101355.1	CAMUSX000000000	SAMEA111497058	uncultured Clostridia bacterium
GCA_947101955.1	CAMUUU000000000	SAMEA111497109	uncultured Clostridia bacterium
GCA_947100945.1	CAMUSK000000000	SAMEA111497113	uncultured Clostridia bacterium
GCA_947101845.1	CAMUUN000000000	SAMEA111497052	uncultured Clostridium sp.
GCA_947101545.1	CAMUTH000000000	SAMEA111497096	uncultured Coriobacteriaceae bacterium
GCA_947101435.1	CAMUTD000000000	SAMEA111497054	uncultured Dorea sp.
GCA_947101525.1	CAMUUA000000000	SAMEA111497067	uncultured Dorea sp.
GCA_947101745.1	CAMUUB000000000	SAMEA111497099	uncultured Dorea sp.
GCA_947101635.1	CAMUTW000000000	SAMEA111497086	uncultured Enterorhabdus sp.
GCA_947101455.1	CAMUTG000000000	SAMEA111497107	uncultured Enterorhabdus sp.
GCA_947100965.1	CAMUSM000000000	SAMEA111497072	uncultured Firmicutes bacterium
GCA_947101495.1	CAMUTE000000000	SAMEA111497112	uncultured Firmicutes bacterium
GCA_947101935.1	CAMUUR000000000	SAMEA111497063	uncultured Firmicutes bacterium
GCA_947101785.1	CAMUUJ000000000	SAMEA111497074	uncultured Firmicutes bacterium
GCA_947101645.1	CAMUTV000000000	SAMEA111497075	uncultured Flavonifractor sp.
GCA_947101555.1	CAMUTQ000000000	SAMEA111497097	uncultured Lachnoclostridium sp.
GCA_947101755.1	CAMUUC000000000	SAMEA111497062	uncultured Lachnospiraceae bacterium
GCA_947101905.1	CAMUUQ000000000	SAMEA111497083	uncultured Lachnospiraceae bacterium
GCA_947101825.1	CAMUUK000000000	SAMEA111497079	uncultured Lachnospiraceae bacterium
GCA_947100985.1	CAMUSO000000000	SAMEA111497110	uncultured Lachnospiraceae bacterium
GCA_947101605.1	CAMUTO000000000	SAMEA111497084	uncultured Lachnospiraceae bacterium
GCA_947102085.1	CAMUUY000000000	SAMEA111497070	uncultured Lachnospiraceae bacterium
GCA_947101485.1	CAMUTF000000000	SAMEA111497111	uncultured Lachnospiraceae bacterium
GCA_947101655.1	CAMUTZ000000000	SAMEA111497088	uncultured Lachnospiraceae bacterium
GCA_947101975.1	CAMUUV000000000	SAMEA111497098	uncultured Lachnospiraceae bacterium
GCA_947100955.1	CAMUSQ000000000	SAMEA111497076	uncultured Lachnospiraceae bacterium
GCA_947101815.1	CAMUUM000000000	SAMEA111497082	uncultured Lachnospiraceae bacterium
GCA_947101855.1	CAMUUD000000000	SAMEA111497095	uncultured Lactobacillus sp.
GCA_947101425.1	CAMUTC000000000	SAMEA111497066	uncultured Oscillibacter sp.
GCA_947100975.1	CAMUSN000000000	SAMEA111497064	uncultured Oscillibacter sp.
GCA_947101945.1	CAMUUT000000000	SAMEA111497055	uncultured Porphyromonadaceae bacterium
GCA_947101585.1	CAMUTL000000000	SAMEA111497071	uncultured Porphyromonadaceae bacterium
GCA_947101625.1	CAMUTP000000000	SAMEA111497080	uncultured Roseburia sp.
GCA_947101575.1	CAMUTK000000000	SAMEA111497049	uncultured Roseburia sp.
GCA_947101565.1	CAMUTN000000000	SAMEA111497092	uncultured Roseburia sp.
GCA_947101395.1	CAMUTA000000000	SAMEA111497050	uncultured bacterium
GCA_947101915.1	CAMUUS000000000	SAMEA111497093	uncultured bacterium
GCA_947101365.1	CAMUSY000000000	SAMEA111497114	uncultured bacterium
GCA_947101535.1	CAMUTY000000000	SAMEA111497065	uncultured bacterium
GCA_947101675.1	CAMUTR000000000	SAMEA111497081	uncultured bacterium
GCA_947101805.1	CAMUUI000000000	SAMEA111497100	uncultured bacterium
GCA_947101595.1	CAMUTU000000000	SAMEA111497078	uncultured bacterium

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EMG produced TPA metagenomics assembly of PRJNA704567 data set (Nicotinamide Riboside-Conditioned Microbiota Deflects High-Fat Diet-Induced Weight Gain in Mice).

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