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Metagenome-assembled genome: SRR13827526_bin.16_metawrap_v1.3_MAG

Identifiers
BioSample: SAMEA111497112; SRA: ERS13590877
Organism
uncultured Firmicutes bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; environmental samples
Attributes
broad-scale environmental contextmouse digestive system
collection date2018-04-19
environmental mediumfeces
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcemouse gut metagenome
project nameIn this study, we sought to investigate the hypothesis that dietary nicotinamide riboside supplementation alters the murine gut microbiome to mediate diet-induced weight gain deflection. To test this hypothesis, we fed C57BL6J males a high-fat diet supplemented with or without NR and then performed a fecal material transplant into naive recipients.
sample nameSRR13827526_bin.16_metawrap_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-10-21
ENA-LAST-UPDATE2022-10-21
External IdSAMEA111497112
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-10-21T12:25:30Z
INSDC last update2022-10-21T12:25:30Z
INSDC statuspublic
Submitter IdSRR13827526_bin.16_metawrap_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetawrap v1.3
broker nameEMG broker account, EMBL-EBI
completeness score93.45
completeness softwareCheckM
contamination score0.67
geographic location (latitude)43.043
geographic location (longitude)-88.0221
local environmental contextdigestive tube
metagenomic sourcemouse gut metagenome
sample derived fromSAMN18043931
sequencing methodIllumina NovaSeq 6000
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__;o__;f__;g__;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13827526 of study SRP308864.

BioProject
PRJEB56244
Retrieve all samples from this project

Submission
EBI; 2022-10-22
Accession:
SAMEA111497112
ID:
31414012

BioProject Nucleotide

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