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Accession: PRJNA607555 ID: 607555

Agrobacterium

Agrobacterium sp. Genome sequencing and assembly

Agrobacterium tumefaciens and Agrobacterium rhizogenes strains sequenced as part of a study on Ti plasmid evolution and epidemiology
AccessionPRJNA607555
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsWeisberg AJ et al., "Unexpected conservation and global transmission of agrobacterial virulence plasmids.", Science, 2020 Jun 5;368(6495)
SubmissionRegistration date: 19-Feb-2020
Oregon State University
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)304
WGS master186
Genomic DNA118
SRA Experiments230
Protein Sequences124568
Publications
PubMed1
Other datasets
BioSample209
Assembly208
Assembly details:
Assembly levelNumber of Assemblies
22
94
92
208
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_013318415.1ScaffoldJAAMOQ000000000
SAMN14165502
1D132
GCA_013320725.1ContigJAAMOS000000000
SAMN14165509
12D13
GCA_013317735.2Complete genomeSAMN14165517
N33/94
GCA_013317665.2Complete genomeSAMN14165483
N40/94
GCA_013318355.2Complete genomeSAMN14165480
2788
GCA_013318095.2Complete genomeSAMN14165530
Di1525a
GCA_013322225.1ScaffoldJAAMFB000000000
SAMN14165469
FPH-AR2
GCA_013320535.1ScaffoldJAAMOR000000000
SAMN14165621
17-1009
GCA_013317795.2Complete genomeSAMN14165467
LMG 267
GCA_013320925.1ScaffoldJAAMFC000000000
SAMN14165478
AS2A7
GCA_013320905.1ScaffoldJAAMCP000000000
SAMN14165513
A19/93
GCA_013320895.1ScaffoldJAANSB000000000
SAMN14165489
Eu2-1NK
GCA_013320875.1ContigJAAMCO000000000
SAMN14165488
Eu2-1RS
GCA_013320855.1ScaffoldJAAMCN000000000
SAMN14165491
Eu3-2RS
GCA_013320835.1ScaffoldJAANSA000000000
SAMN14165485
Eu3-2NK
GCA_017584165.1Complete genomeSAMN14165629
W2/73
GCA_013317635.1ScaffoldJAAMOL000000000
SAMN14165561
NCPPB 2657
GCA_013337085.1ScaffoldJAALYJ000000000
SAMN14165465
W9/94
GCA_013317625.1ScaffoldJAALYO000000000
SAMN14165525
O16/94
GCA_013317565.1ContigJAALYL000000000
SAMN14165527
T90/95
GCA_013317575.1ContigJAALYM000000000
SAMN14165515
P22/94
GCA_013317535.1ContigJAALYK000000000
SAMN14165516
W10/94
GCA_013317525.1ScaffoldJAALYI000000000
SAMN14165546
Y2/73
GCA_013317515.1ScaffoldJAALYH000000000
SAMN14165552
YO0101
GCA_013318375.1ScaffoldJAANRZ000000000
SAMN14165501
1D1609
GCA_013318385.1ContigJAALZT000000000
SAMN14165500
1D1460
GCA_013318315.1ContigJAALZR000000000
SAMN14165555
A51
GCA_013318285.1ScaffoldJAANRY000000000
SAMN14165510
A6
GCA_013318235.1ContigJAALZO000000000
SAMN14165452
AF52/95
GCA_013318215.1ContigJAALZN000000000
SAMN14165445
AF82/95
GCA_013318185.1ScaffoldJAALZM000000000
SAMN14165503
ATCC 15955
GCA_013318175.1ContigJAALZL000000000
SAMN14165498
B6806
GCA_013318155.1ContigJAALZK000000000
SAMN14165473
CG53/95
GCA_013318115.1ContigJAALZI000000000
SAMN14165477
Di1519
GCA_013318065.1ScaffoldJAALZG000000000
SAMN14165454
G 8.3
GCA_013318025.1ScaffoldJAALZE000000000
SAMN14165539
G9/79
GCA_013317995.1ContigJAALZD000000000
SAMN14165511
GC1A3
GCA_013317925.1ContigJAALZB000000000
SAMN14165475
IL15
GCA_013317915.1ContigJAALYZ000000000
SAMN14165484
J2/75
GCA_013317895.1ContigJAALYY000000000
SAMN14165476
J3/75
GCA_013317845.1ScaffoldJAALYX000000000
SAMN14165542
K196/80
GCA_013317835.1ContigJAALYV000000000
SAMN14165558
K599
GCA_013317815.1ScaffoldJAALYU000000000
SAMN14165462
LMG 232
GCA_013317755.1ContigJAALYQ000000000
SAMN14165544
M56 /79
GCA_013317685.1ContigJAALYP000000000
SAMN14165560
NCPPB 2655
GCA_013320735.1ContigJAAMCJ000000000
SAMN14165553
06-777-2L
GCA_013320715.1ContigJAAMCI000000000
SAMN14165508
12D1
GCA_013320685.1ScaffoldJAAMCG000000000
SAMN14165626
16-1607-1A
GCA_013320635.1ContigJAAMCE000000000
SAMN14165496
16-280-1b
GCA_013320625.1ContigJAAMCF000000000
SAMN14165494
16-280-1a
GCA_013320615.1ScaffoldJAAMCD000000000
SAMN14165619
17-1007
GCA_013320575.1ScaffoldJAAMCB000000000
SAMN14165562
17-1344a
GCA_013320585.1ContigJAAMCC000000000
SAMN14165620
17-1008
GCA_013320795.1ContigJAAMCL000000000
SAMN14165551
06-478 st
GCA_013320775.1ScaffoldJAAMCK000000000
SAMN14165554
06-617-1
GCA_013320545.1ContigJAAMCA000000000
SAMN14165563
17-1344b
GCA_013320515.1ScaffoldJAAMBY000000000
SAMN14165567
17-1345-1b
GCA_013320495.1ScaffoldJAAMBZ000000000
SAMN14165566
17-1345-1a
GCA_013320465.1ScaffoldJAAMBX000000000
SAMN14165568
17-1346-1b
GCA_013320455.1ContigJAAMBW000000000
SAMN14165564
17-1347a
GCA_013320435.1ScaffoldJAAMBV000000000
SAMN14165565
17-1347b
GCA_013320385.1ScaffoldJAAMBU000000000
SAMN14165569
17-1474-1a
GCA_013320405.1ScaffoldJAAMBS000000000
SAMN14165571
17-1474-1c
GCA_013320375.1ContigJAAMBT000000000
SAMN14165570
17-1474-1b
GCA_013320335.1ContigJAAMBQ000000000
SAMN14165573
17-1474-1e
GCA_013320345.1ContigJAAMBR000000000
SAMN14165572
17-1474-1d
GCA_013320295.1ContigJAAMBO000000000
SAMN14165575
17-1474aii
GCA_013320305.1ScaffoldJAAMBP000000000
SAMN14165574
17-1474ai
GCA_013320275.1ScaffoldJAAMAO000000000
SAMN14165610
17-712-1iv_(e)
GCA_013320245.1ScaffoldJAAMBN000000000
SAMN14165576
17-1474bi
GCA_013320235.1ScaffoldJAAMAL000000000
SAMN14165613
17-712b-1ii
GCA_013319235.1ContigJAAMBK000000000
SAMN14165579
17-1474cii
GCA_013319245.1ContigJAAMBM000000000
SAMN14165577
17-1474bii
GCA_013319225.1ScaffoldJAAMBL000000000
SAMN14165578
17-1474ci
GCA_013319215.1ContigJAAMBJ000000000
SAMN14165580
17-1474di
GCA_013319165.1ContigJAAMBH000000000
SAMN14165582
17-1474ei
GCA_013319155.1ContigJAAMBI000000000
SAMN14165581
17-1474dii
GCA_013319125.1ScaffoldJAAMBF000000000
SAMN14165584
17-1802-1b
GCA_013319145.1ScaffoldJAAMBG000000000
SAMN14165583
17-1802-1a
GCA_013319115.1ContigJAAMBE000000000
SAMN14165585
17-1803-1b
GCA_013319085.1ScaffoldJAAMBB000000000
SAMN14165623
17-1850-1d
GCA_013319065.1ScaffoldJAAMBD000000000
SAMN14165586
17-1804-1a
GCA_013319045.1ScaffoldJAAMBC000000000
SAMN14165622
17-1850-1cii
GCA_013319035.1ScaffoldJAAMBA000000000
SAMN14165624
17-1850B-1a
GCA_013319015.1ScaffoldJAAMAZ000000000
SAMN14165625
17-1850B-1b
GCA_013318975.1ScaffoldJAAMAY000000000
SAMN14165587
17-1853-1a
GCA_013318955.1ScaffoldJAAMAW000000000
SAMN14165589
17-1853-1c
GCA_013318965.1ScaffoldJAAMAX000000000
SAMN14165588
17-1853-1b
GCA_013318935.1ScaffoldJAAMAV000000000
SAMN14165592
17-642-1b
GCA_013318915.1ScaffoldJAAMAU000000000
SAMN14165593
17-642-2b
GCA_013318895.1ScaffoldJAAMAT000000000
SAMN14165605
17-712-1iii
GCA_013318875.1ScaffoldJAAMAS000000000
SAMN14165606
17-712-1iv_(a)
GCA_013318835.1ScaffoldJAAMAR000000000
SAMN14165607
17-712-1iv_(b)
GCA_013318845.1ScaffoldJAAMAQ000000000
SAMN14165608
17-712-1iv_(c)
GCA_013318815.1ScaffoldJAAMAP000000000
SAMN14165609
17-712-1iv_(d)
GCA_013318795.1ScaffoldJAAMAM000000000
SAMN14165612
17-712a-1ii
GCA_013318765.1ScaffoldJAAMAN000000000
SAMN14165611
17-712-1iv_(f)
GCA_013318745.1ScaffoldJAAMAK000000000
SAMN14165614
17-712c-1ii
GCA_013318725.1ScaffoldJAAMAJ000000000
SAMN14165615
17-712d-1ii
GCA_013318715.1ScaffoldJAAMAI000000000
SAMN14165616
17-712e-1ii
GCA_013318695.1ScaffoldJAAMAG000000000
SAMN14165618
17-712h-1ii
GCA_013318675.1ScaffoldJAAMAH000000000
SAMN14165617
17-712g-1ii
GCA_013318655.1ScaffoldJAAMAF000000000
SAMN14165594
17-713-1ia
GCA_013318625.1ScaffoldJAAMAE000000000
SAMN14165595
17-713-1ib
GCA_013318615.1ScaffoldJAAMAC000000000
SAMN14165597
17-713-1id
GCA_013318585.1ScaffoldJAAMAD000000000
SAMN14165596
17-713-1ic
GCA_013318575.1ScaffoldJAAMAB000000000
SAMN14165598
17-713-1ie
GCA_013318555.1ScaffoldJAAMAA000000000
SAMN14165599
17-713-1if
GCA_013318515.1ScaffoldJAALZW000000000
SAMN14165603
17-713-lii
GCA_013318505.1ScaffoldJAALZZ000000000
SAMN14165600
17-713-1ig
GCA_013318495.1ScaffoldJAALZX000000000
SAMN14165601
17-713-1iv
GCA_013318475.1ScaffoldJAALZY000000000
SAMN14165604
17-713-1iii
GCA_013318455.1ScaffoldJAALZV000000000
SAMN14165602
17-713-lik
GCA_013318425.1ContigJAALZU000000000
SAMN14165499
1D1108
GCA_013305205.1ContigJAAKZU000000000
SAMN14177183
17-1474eii
GCA_013317965.2Complete genomeSAMN14165523
H25/79
GCA_013318255.2Complete genomeSAMN14165457
AF1/95
GCA_013317615.2Complete genomeSAMN14165531
O54/95
GCA_013318275.2Complete genomeSAMN14165556
A74a
GCA_013318335.2Complete genomeSAMN14165550
A47a
GCA_013317765.2Complete genomeSAMN14165472
LMG 292
GCA_013317865.2Complete genomeSAMN14165482
K224
GCA_013320675.2Complete genomeSAMN14165557
14-818c
GCA_013318015.2Complete genomeSAMN14165538
G3/79
GCA_013318055.2Complete genomeSAMN14165464
FPH-AT4
GCA_013318125.2Complete genomeSAMN14165537
CG920
GCA_017584185.1Complete genomeSAMN14165627
Q15/94
GCA_013317955.2Complete genomeSAMN14165460
IL30
GCA_013317715.2Complete genomeSAMN14165428
LMG 305
GCA_013317475.1ScaffoldJAALYF000000000
SAMN14165430
BM37/95
GCA_013317445.1ContigJAALYD000000000
SAMN14165505
CG678
GCA_013317435.1ContigJAALYG000000000
SAMN14165468
AV25/95
GCA_013317415.1ContigJAALYE000000000
SAMN14165504
CG412
GCA_013317425.1ContigJAALYC000000000
SAMN14165506
CG78
GCA_013317345.1ScaffoldJAALXZ000000000
SAMN14165455
T267/94
GCA_013317315.1ScaffoldJAALYB000000000
SAMN14165507
F2/5
GCA_013317355.1ScaffoldJAALXX000000000
SAMN14165459
T393/94
GCA_013317325.1ContigJAALYA000000000
SAMN14165436
P86/93
GCA_013317335.1ScaffoldJAALXY000000000
SAMN14165437
T268/95
GCA_013337045.2Complete genomeSAMN14165442
T60/94
GCA_013317215.1ScaffoldJAALXV000000000
SAMN14165463
V80/94
GCA_013317225.1ContigJAALXU000000000
SAMN14165440
AL 9.2.2
GCA_013322055.1ContigJAAMOT000000000
SAMN14165481
AF27/95
GCA_013322065.1ContigJAAMET000000000
SAMN14165448
AL. 21.2
GCA_013322025.1ContigJAAMEQ000000000
SAMN14165549
AR13K/71
GCA_013321975.1ContigJAAMER000000000
SAMN14165519
AQ11/95
GCA_013322015.1ScaffoldJAAMES000000000
SAMN14165520
AP82/95
GCA_013321985.1ScaffoldJAAMEP000000000
SAMN14165528
AS10/95
GCA_013321955.1ContigJAAMEO000000000
SAMN14165497
ATCC 15834
GCA_013321935.1ScaffoldJAAMEN000000000
SAMN14165535
B1/74
GCA_013321905.1ContigJAAMEL000000000
SAMN14165536
B4/73
GCA_013321855.1ScaffoldJAAMEJ000000000
SAMN14165495
C16/80
GCA_013321875.1ScaffoldJAAMEK000000000
SAMN14165547
B49C/83
GCA_013321865.1ContigJAAMEM000000000
SAMN14165526
B147/94
GCA_013321835.1ContigJAAMEI000000000
SAMN14165492
CA84/95
GCA_013321805.1ContigJAAMEH000000000
SAMN14165425
CG101/95
GCA_013321785.1ContigJAAMEG000000000
SAMN14165470
CM65/95
GCA_013321775.1ContigJAAMEF000000000
SAMN14165429
CM79/95
GCA_013321745.1ScaffoldJAAMEC000000000
SAMN14165439
D1/76
GCA_013321735.1ContigJAAMEE000000000
SAMN14165490
CM80/95
GCA_013321715.1ContigJAAMEB000000000
SAMN14165450
D1/94
GCA_013321695.1ContigJAAMED000000000
SAMN14165479
CP182/95
GCA_013321665.1ScaffoldJAAMEA000000000
SAMN14165451
D100/85
GCA_013321655.1ScaffoldJAAMDZ000000000
SAMN14165438
D108/85
GCA_013321635.1ContigJAAMDW000000000
SAMN14165474
Di1411
GCA_013321615.1ScaffoldJAAMDX000000000
SAMN14165447
D2/76
GCA_013321575.1ScaffoldJAAMDV000000000
SAMN14165426
Di1462
GCA_013321565.1ContigJAAMDY000000000
SAMN14165548
D10b/87
GCA_013321555.1ContigJAAMDG000000000
SAMN14165524
P23/94
GCA_013321505.1ContigJAAMDA000000000
SAMN14165471
RO 11.4
GCA_013321495.1ContigJAAMDT000000000
SAMN14165424
H16/79
GCA_013321485.1ScaffoldJAAMDR000000000
SAMN14165431
J10B/93
GCA_013321475.1ContigJAAMDU000000000
SAMN14165461
G 10.5
GCA_013321455.1ContigJAAMDS000000000
SAMN14165540
I2/75
GCA_013321425.1ContigJAAMDO000000000
SAMN14165541
K6/73
GCA_013321415.1ScaffoldJAAMDQ000000000
SAMN14165514
J5a/93
GCA_013321375.1ScaffoldJAAMDP000000000
SAMN14165512
K27
GCA_013321355.1ContigJAAMDN000000000
SAMN14165533
K95/95
GCA_013321365.1ScaffoldJAAMDM000000000
SAMN14165456
L20/94
GCA_013321315.1ContigJAAMDK000000000
SAMN14165543
M2/73
GCA_013321305.1ContigJAAMDL000000000
SAMN14165444
L29/94
GCA_013321295.1ContigJAAMDJ000000000
SAMN14165433
N64/94
GCA_013321275.1ContigJAAMDH000000000
SAMN14165545
P1/75
GCA_013321255.1ContigJAAMDI000000000
SAMN14165559
NCIB 8196
GCA_013321225.1ContigJAAMDF000000000
SAMN14165435
PVM 1.5
GCA_013321215.1ContigJAAMDD000000000
SAMN14165449
R 1.1
GCA_013321185.1ContigJAAMDC000000000
SAMN14165432
R 10.1
GCA_013321175.1ContigJAAMDE000000000
SAMN14165441
PVM 10.5
GCA_013321145.1ContigJAAMCZ000000000
SAMN14165466
RO 2.2
GCA_013321135.1ContigJAAMDB000000000
SAMN14165446
RO 10.5
GCA_013321105.1ScaffoldJAAMCY000000000
SAMN14165493
S32/96
GCA_013321095.1ContigJAAMCX000000000
SAMN14165487
T155/95
GCA_013321075.1ScaffoldJAAMCW000000000
SAMN14165522
T5/73
GCA_013321035.1ContigJAAMCT000000000
SAMN14165458
W 1.4
GCA_013321045.1ContigJAAMCS000000000
SAMN14165532
X1/95
GCA_013321005.1ScaffoldJAAMCV000000000
SAMN14165443
U167/95
GCA_013320995.1ContigJAAMCU000000000
SAMN14165453
W 1.1
GCA_013320965.1ContigJAAMCR000000000
SAMN14165521
Y79/96
GCA_013320955.1ContigJAAMCQ000000000
SAMN14165518
Z4/95
GCA_013322215.1ContigJAAMEZ000000000
SAMN14165591
17-2069-2c
GCA_013322155.1ContigJAAMEX000000000
SAMN14165427
A 6.4
GCA_013322175.1ContigJAAMEY000000000
SAMN14165434
A 13.1
GCA_013322165.1ContigJAAMFA000000000
SAMN14165590
17-2069-2b
GCA_013322135.1ScaffoldJAAMEW000000000
SAMN14165534
A1/90
GCA_013322075.1ContigJAAMEV000000000
SAMN14165422
A4
GCA_013322085.1ContigJAAMEU000000000
SAMN14165486
AF44/96
GCA_017584205.1Complete genomeSAMN14165628
CA75/95
GCA_013320815.1ContigJAAMCM000000000
SAMN14165529
Di1472
SRA Data Details
ParameterValue
Data volume, Gbases309
Data volume, Tbytes0.16

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