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Accession: PRJNA294416 ID: 294416

FDA-CDC Antimicrobial Resistance Bank

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This project is a component of the CDC DHQP Seq

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3 additional projects are components of the CDC DHQP Seq.

The purpose of this bacterial bank is to provide panels of resistant bacteria, which can be used to challenge diagnostic devices and new antibiotic agents. These panels are assembled by Centers for Disease Control and Prevention (CDC) in collaboration with the Food and Drug Administration (FDA).

Accession	PRJNA294416
Type	Umbrella project (Subtype:Disease)
Keyword	GMI
Submission	Registration date: 1-Sep-2015 NCBI
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1532
WGS master	103
Genomic DNA	685
SRA Experiments	1165
Protein Sequences	1248139
Other datasets
BioSample	827
Assembly	323

SRA Data Details

Parameter	Value
Data volume, Gbases	1,116
Data volume, Tbytes	2.08

FDA-CDC Antimicrobial Resistance Bank encompasses the following 25 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

Complete genome
Contigs
SRA or Trace
Total

7
2
16
25

BioProject accession	Assembly level	Name	Title
PRJNA317141	Contigs	Acinetobacter	Acinetobacter species Genome sequencing and assembly (Centers for Disease Control...)
PRJNA523730	SRA or Trace	Aminoglycoside/tetracycline Resistance Genome sequencing and assembly	Aminoglycoside/tetracycline Resistance Genome sequencing and assembly (Centers for Disease Control...)
PRJNA523433	SRA or Trace	Cefepime-zidebactam Challenge Set Genome sequencing and assembly	Cefepime-zidebactam Challenge Set Genome sequencing and assembly (Centers for Disease Control...)
PRJNA391513	SRA or Trace	Ceftazidime/avibactam Panel Genome sequencing and assembly	Ceftazidime/avibactam Panel Genome sequencing and assembly (Centers for Disease Control...)
PRJNA391510	SRA or Trace	Ceftolozane/tazobactam Panel Genome sequencing and assembly	Ceftolozane/tazobactam Panel Genome sequencing and assembly (Centers for Disease Control...)

List all 25 'Genome sequencing' projects...

BioProject accession	Assembly level	Name	Title
PRJNA317141	Contigs	Acinetobacter	Acinetobacter species Genome sequencing and assembly (Centers for Disease Control...)
PRJNA523730	SRA or Trace	Aminoglycoside/tetracycline Resistance Genome sequencing and assembly	Aminoglycoside/tetracycline Resistance Genome sequencing and assembly (Centers for Disease Control...)
PRJNA523433	SRA or Trace	Cefepime-zidebactam Challenge Set Genome sequencing and assembly	Cefepime-zidebactam Challenge Set Genome sequencing and assembly (Centers for Disease Control...)
PRJNA391513	SRA or Trace	Ceftazidime/avibactam Panel Genome sequencing and assembly	Ceftazidime/avibactam Panel Genome sequencing and assembly (Centers for Disease Control...)
PRJNA391510	SRA or Trace	Ceftolozane/tazobactam Panel Genome sequencing and assembly	Ceftolozane/tazobactam Panel Genome sequencing and assembly (Centers for Disease Control...)
PRJNA577141	Complete genome	Clostridioides difficile EIP 2016 Genome sequencing and assembly	Clostridioides difficile EIP 2016 Genome sequencing and assembly (Centers for Disease Control...)
PRJNA523427	SRA or Trace	Delafloxacin Challenge Set Genome sequencing and assembly	Delafloxacin Challenge Set Genome sequencing and assembly (Centers for Disease Control...)
PRJNA562719	Complete genome	Enteric Pathogen Diversity Genome sequencing and assembly	Enteric Pathogen Diversity Genome sequencing and assembly (Centers for Disease Control...)
PRJNA292901	Complete genome	Enterobacteriaceae Carbapenem Breakpoint genome sequencing and assembly	Enterobacteriaceae Carbapenem Breakpoint genome sequencing and assembly (Centers for Disease Control...)
PRJNA292902	Complete genome	Enterobacteriaceae Carbapenemase Diversity genome sequencing and assembly	Enterobacteriaceae Carbapenemase Diversity genome sequencing and assembly (Centers for Disease Control...)
PRJNA635383	SRA or Trace	Enterococcus	Vancomycin-Resistant Enterococci (VRE) (Centers for disease Control...)
PRJNA635420	SRA or Trace	Escherichia coli, Enterobacter cloacae, Klebsiella pneumoniae	Meropenem/vaborbactam Verification Panel (Centers for disease Control...)
PRJNA835887	SRA or Trace	Escherichia sp., Klebsiella sp.	Multi-site Gram-negative Surveillance Initiative MuGSI ESBL panel (CDC)
PRJNA316321	Complete genome	FDA/CDC Antimicrobial Resistant Isolate Bank	FDA/CDC Isolate Bank Genome Sequencing (FDA/CDC)
PRJNA292904	Complete genome	Gram Negative Carbapenemase Detection Genome sequencing and assembly	Gram Negative Carbapenemase Detection Genome sequencing and assembly (Centers for Disease Control...)
PRJNA844926	SRA or Trace	IMP-type metallo-beta-lactamase Supplement	IMP-type metallo-beta-lactamase Supplement (CDC)
PRJNA523732	SRA or Trace	Imipenem/relebactam Challenge Set Genome sequencing and assembly	Imipenem/relebactam Challenge Set Genome sequencing and assembly (Centers for Disease Control...)
PRJNA523425	Complete genome	Isolates with New or Novel Antibiotic Resistance Genome sequencing and assembly	Isolates with New or Novel Antibiotic Resistance Genome sequencing and assembly (Centers for Disease Control...)
PRJNA953359	Contigs	Multi-Mechanism	Multi-Mechanism (CDC)
PRJNA523429	SRA or Trace	Plazomicin Challenge Set Genome sequencing and assembly	Plazomicin Challenge Set Genome sequencing and assembly (Centers for Disease Control...)
PRJNA317143	SRA or Trace	Pseudomonas aeruginosa	Pseudomonas aeruginosa Genome sequencing and assembly (Centers for Disease Control...)
PRJNA317148	SRA or Trace	Staphylococcus aureus	Staphylococcus aureus Genome sequencing and assembly (Centers for Disease Control...)
PRJNA391514	SRA or Trace	Staphylococcus aureus	Staphylococcus aureus Genome sequencing and assembly (Centers for Disease Control...)
PRJNA592083	SRA or Trace	Staphylococcus aureus	Difficult to Detect Staphylococcus aureus Genome sequencing and assembly (Centers for Disease Control...)
PRJNA523428	SRA or Trace	Tedizolid/Linezolid (Oxazolidinones) Resistant Staphylococci Genome sequencing and assembly	Tedizolid/Linezolid (Oxazolidinones) Resistant Staphylococci Genome sequencing and assembly (Centers for Disease Control...)

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