Ausgem represents a strategic alliance and collaborative partnership between the New South Wales Department of Primary Industries’ Elizabeth Macarthur Agricultural Institute (EMAI) and the ithree institute atthe University of Technology Sydney (UTS) to provide a unique set of translational skills, knowledge and facilities enabling high throughput sequence analysis of a range of pathogen genomes leading to animproved understanding of the disease process and innovative ways to mitigate the risks associated with a range of infectious diseases. http://www.ausgem.net/ This Bioproject includes genome submissions fromseveral Ausgem publications from 2017 onwards.
| Accession | PRJNA479481 |
| Type | Umbrella project |
| Submission | Registration date: 3-Jul-2018
University of Technology Sydney |
| Related Resources | |
| Relevance | One Health |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 119064 |
| WGS master | 1369 |
| Genomic DNA | 12 |
| SRA Experiments | 5471 |
| Protein Sequences | 1485789 |
| Publications |
| PubMed | 2 |
| PMC | 1 |
| Other datasets |
| BioSample | 2925 |
| Assembly | 1370 |
This project encompasses the following 16 sub-projects:
| Project Type | Number of Projects |
| Genome sequencing |
2
3
6
5
16
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJEB21464 | Complete genome | Ausgem Porcine and Human E. coli | Ausgem Porcine and Human E. coli (Ausgem) | | PRJNA528851 | Contigs | Bacteria | WGS of E.coli collected from food products and wild animals (University of Technology...) | | PRJNA827950 | SRA or Trace | E. coli ST372 | E. coli ST372 (The ithree institute) | | PRJNA563564 | Contigs | E. coli from German produce | E. coli from German produce (The ithree institute) | | PRJNA526575 | Contigs | E. coli in Australian farm chicken | E. coli in Australian farm chicken (University of Technology...) |
List all 16 'Genome sequencing' projects...BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJEB21464 | Complete genome | Ausgem Porcine and Human E. coli | Ausgem Porcine and Human E. coli (Ausgem) | | PRJNA528851 | Contigs | Bacteria | WGS of E.coli collected from food products and wild animals (University of Technology...) | | PRJNA827950 | SRA or Trace | E. coli ST372 | E. coli ST372 (The ithree institute) | | PRJNA563564 | Contigs | E. coli from German produce | E. coli from German produce (The ithree institute) | | PRJNA526575 | Contigs | E. coli in Australian farm chicken | E. coli in Australian farm chicken (University of Technology...) | | PRJNA494598 | Complete genome | Enterobacter hormaechei | Enterobacter hormaechei strain:C15117 | isolate:1 Genome sequencing and assembly (Ausgem) | | PRJNA727368 | SRA or Trace | Escherichia coli ST58 | Escherichia coli ST58 (The ithree institute) | | PRJNA480723 | Scaffolds | Genomic Epidemiology of isolates causing human blood stream infections | Genomic Epidemiology of isolates causing human blood stream infections (Ausgem) | | PRJNA509690 | Scaffolds | Genomic analysis of porcine faecal commensal E. coli from sows and their offspring | Genomic analysis of porcine faecal commensal E. coli from sows and their offspring (The ithree institute) | | PRJNA407708 | Contigs | Human Clinical ExPEC | Human Clinical ExPEC (University of Technology...) | | PRJNA526405 | SRA or Trace | Pig microbiome | Pig microbiome (University of Technology...) | | PRJNA526979 | Contigs | Samonella in seagull, NSW Australia | Samonella in seagull, NSW Australia (University of Technology...) | | PRJNA508590 | SRA or Trace | Sequencing of ST131-H22 Escherichia coli strains | Sequencing of ST131-H22 Escherichia coli strains (The ithree institute) | | PRJNA479542 | Scaffolds | Whole Genome Sequence Analysis of Avian Pathogenic E. coli - An Australian Perspective | Whole Genome Sequence Analysis of Avian Pathogenic E. coli - An Australian Perspective (University of Technology,...) | | PRJNA970052 | SRA or Trace | Whole Genome Sequence Analysis of Avian Pathogenic E. coli isolated from cases of lameness | Whole Genome Sequence Analysis of Avian Pathogenic E. coli isolated from cases of lameness (AusGEM) | | PRJNA526980 | Contigs | Whole-genomes of multi-resistant Escherichia coli isolates derived from different environments | Whole-genomes of multi-resistant Escherichia coli isolates derived from different environments (University of Technology...) |
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