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Accession: PRJNA183850 ID: 183850

Salmonella enterica

GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center

See Genome Information for Salmonella enterica
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
AccessionPRJNA183850
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismSalmonella enterica[Taxonomy ID: 28901]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica
SubmissionRegistration date: 25-Jan-2016
New York State Dept. of Health - Wadsworth Center
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)10554
WGS master2077
Genomic DNA4
SRA Experiments2251
Protein Sequences436325
Other datasets
BioSample2285
Assembly2079
Assembly details:
Assembly levelNumber of Assemblies
2
4
2073
2079
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
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IDR2100108225-01
GCA_021568035.1ContigABETJO000000000
SAMN25225892
IDR2100108220-01
GCA_021567915.1ContigABETJK000000000
SAMN25225893
IDR2100108221-01
GCA_021567895.1ContigABETJI000000000
SAMN25225888
IDR2100108147-01
GCA_021567875.1ContigABETJJ000000000
SAMN25225886
IDR2100108139-01
GCA_016591095.1ContigAAYRCN000000000
SAMN03795472
CFSAN035083
GCA_016377165.1ContigAAYIZW000000000
SAMN02595876
NY-swgs1162
GCA_016376085.1ContigAAYIXQ000000000
SAMN08387153
ULBRA-SA214
GCA_016375225.1ContigAAYIWO000000000
SAMN04958696
NY64247673
GCA_016335535.1ContigAAYGLW000000000
SAMN04535179
NY62259097
GCA_016335135.1ContigAAYGLL000000000
SAMN04958697
NY64247713
GCA_016331565.1ContigAAYGEI000000000
SAMN02595814
NY-swgs1100
GCA_016330925.1ContigAAYGDJ000000000
SAMN02595812
NY-swgs1098
GCA_016328185.1ContigAAYFYC000000000
SAMN03276080
NY-N14325
GCA_016328785.1ContigAAYFZD000000000
SAMN02595827
NY-swgs1113
GCA_016328745.1ContigAAYFZB000000000
SAMN02595881
NY-swgs1167
GCA_016328725.1ContigAAYFYY000000000
SAMN02595819
NY-swgs1105
GCA_016328665.1ContigAAYFZA000000000
SAMN02595864
NY-swgs1150
GCA_016328625.1ContigAAYFYX000000000
SAMN02222899
NY_02031374
GCA_016328605.1ContigAAYFYZ000000000
SAMN02595824
NY-swgs1110
GCA_016326545.1ContigAAYFUL000000000
SAMN04535181
NY62259358
GCA_016251335.1ContigAAYBVK000000000
SAMN12662374
PNUSAS092983
GCA_028657815.1ContigABKQVJ000000000
SAMN33310401
N21/154-A1
GCA_028658285.1ContigABKQVZ000000000
SAMN33312881
A21/154-1
GCA_028643505.1ContigABKQQI000000000
SAMN33312878
A21/150-1B
GCA_028643465.1ContigABKQQJ000000000
SAMN33312879
A21/151-6
GCA_028643445.1ContigABKQQH000000000
SAMN33312876
A21/147-12N
GCA_028643425.1ContigABKQQG000000000
SAMN33312877
A21/148-3
GCA_028643405.1ContigABKQQC000000000
SAMN33312874
A21/144-5
GCA_028643385.1ContigABKQQF000000000
SAMN33312888
N22/033-2
GCA_028643365.1ContigABKQQD000000000
SAMN33312887
N22/032-1
GCA_028644285.1ContigABKQRQ000000000
SAMN33312883
N22/025-3
GCA_028644205.1ContigABKQRP000000000
SAMN33312882
N22/012-1
GCA_028644225.1ContigABKQRO000000000
SAMN33312880
A21/152-4
GCA_028644165.1ContigABKQRM000000000
SAMN33312952
A21/158-7
GCA_028644785.1ContigABKQSH000000000
SAMN33312964
A21/214-1
GCA_028642195.1ContigABKQOC000000000
SAMN33310403
N22/001-5
GCA_028642175.1ContigABKQOE000000000
SAMN33310405
N22/017-2
GCA_028642155.1ContigABKQOB000000000
SAMN33310402
N21/155-A1
GCA_028642135.1ContigABKQOD000000000
SAMN33310404
N22/010-1
GCA_028642115.1ContigABKQNU000000000
SAMN33310399
N21/151-1
GCA_028643325.1ContigABKQQE000000000
SAMN33312884
N22/026-1
GCA_028643295.1ContigABKQQA000000000
SAMN33312950
A21/156-8
GCA_028643255.1ContigABKQPS000000000
SAMN33312954
A21/162-7
GCA_028643235.1ContigABKQPX000000000
SAMN33312875
A21/146-7
GCA_028643195.1ContigABKQPW000000000
SAMN33312958
A21/168-5
GCA_028643175.1ContigABKQPU000000000
SAMN33312957
A21/167-3A
GCA_028643155.1ContigABKQPV000000000
SAMN33312955
A21/163-6
GCA_028643115.1ContigABKQPR000000000
SAMN33312965
A21/215-1
GCA_028643135.1ContigABKQPT000000000
SAMN33312951
A21/157-8
GCA_028643095.1ContigABKQPO000000000
SAMN33312961
A21/173-2A
GCA_028643075.1ContigABKQPQ000000000
SAMN33312962
A21/204-4
GCA_028643055.1ContigABKQPP000000000
SAMN33312963
A21/207-1
GCA_028643035.1ContigABKQPN000000000
SAMN33312960
A21/172-4
GCA_028642995.1ContigABKQPL000000000
SAMN33312949
A21/155-1
GCA_028643015.1ContigABKQPM000000000
SAMN33312959
A21/169-2
GCA_028641675.1ContigABKQNC000000000
SAMN33312885
N22/027-1
GCA_028641645.1ContigABKQND000000000
SAMN33312953
A21/160-8
GCA_028641565.1ContigABKQNB000000000
SAMN33312956
A21/164-3
GCA_028641975.1ContigABKQNZ000000000
SAMN33310400
N21/152-A1
GCA_028540305.1ContigABKNHD000000000
SAMN33182352
N21/067-1
GCA_028534435.1ContigABKNEK000000000
SAMN33182358
N21/107-3
GCA_028534415.1ContigABKNEL000000000
SAMN33182356
N21/098-3
GCA_028538575.1ContigABKNFB000000000
SAMN33182345
N21/017-2
GCA_028534625.1ContigABKNEY000000000
SAMN33182349
N21/048-4
GCA_028534555.1ContigABKNEO000000000
SAMN33182361
N21/127-1
GCA_028534535.1ContigABKNER000000000
SAMN33182346
N21/018-2
GCA_028534515.1ContigABKNEP000000000
SAMN33182363
N21/129-2
GCA_028534485.1ContigABKNEQ000000000
SAMN33182362
N21/128-1
GCA_028534375.1ContigABKNEM000000000
SAMN33182344
PPT20-46-B
GCA_028538795.1ContigABKNFK000000000
SAMN33182351
N21/063-1
GCA_028534705.1ContigABKNEU000000000
SAMN33182364
N21/054A-10
GCA_028534685.1ContigABKNES000000000
SAMN33182353
N21/083-1
GCA_028534645.1ContigABKNEX000000000
SAMN33182348
N21/042-4
GCA_028538735.1ContigABKNFJ000000000
SAMN33182350
N21/050-9
GCA_028538715.1ContigABKNFF000000000
SAMN33182359
N21/109-5
GCA_028538695.1ContigABKNFI000000000
SAMN33182360
N21/119-1
GCA_028538675.1ContigABKNFH000000000
SAMN33182347
N21/019-1
GCA_028538655.1ContigABKNFE000000000
SAMN33182355
N21/096-2
GCA_028538635.1ContigABKNFG000000000
SAMN33182357
N21/101-6
GCA_028538615.1ContigABKNFD000000000
SAMN33182354
N21/084-1
GCA_028042195.1ContigABKFRV000000000
SAMN32799924
PPA20-08
GCA_028042175.1ContigABKFRW000000000
SAMN32799929
PPA20-32
GCA_028042115.1ContigABKFRS000000000
SAMN32799937
PPT20-40B
GCA_028042135.1ContigABKFRT000000000
SAMN32799936
PPT20-40
GCA_028042155.1ContigABKFRU000000000
SAMN32799938
PPT20-45
GCA_028042065.1ContigABKFRR000000000
SAMN32799932
PPT20-13
GCA_028043455.1ContigABKFSY000000000
SAMN32799925
PPA20-15-B
GCA_028039935.1ContigABKFQX000000000
SAMN32799922
PPA20-10-B
GCA_028039915.1ContigABKFQW000000000
SAMN32799921
PPT20-07
GCA_028039975.1ContigABKFQZ000000000
SAMN32799934
PPT20-28
GCA_028039955.1ContigABKFQY000000000
SAMN32799933
PPT20-25
GCA_028040095.1ContigABKFRA000000000
SAMN32799928
PPA20-28-B
GCA_028040075.1ContigABKFRB000000000
SAMN32799923
PPA20-07
GCA_028046035.1ContigABKFUH000000000
SAMN32799930
PPAC20-06-B
GCA_028046005.1ContigABKFUG000000000
SAMN32799927
PPA20-24
GCA_028045945.1ContigABKFUE000000000
SAMN32799935
PPT20-34
GCA_028049275.1ContigABKFVT000000000
SAMN32799931
PPAC20-11
GCA_028051885.1ContigABKFWN000000000
SAMN32799926
PPA20-22-B
GCA_029647605.1ContigABLKVA000000000
SAMN33312886
N22/028-1
GCA_029095465.1ContigABKYKC000000000
SAMN33683721
A21/380-1
GCA_029099945.1ContigABKYQR000000000
SAMN33683716
A21/351-1
GCA_029099985.1ContigABKYQV000000000
SAMN33683709
A21/342-3
GCA_029100305.1ContigABKYQZ000000000
SAMN33683714
A21/349-4
GCA_029099725.1ContigABKYQP000000000
SAMN33683712
A21/347-5
GCA_029097305.1ContigABKYNI000000000
SAMN33683723
A21/382-1
GCA_029097285.1ContigABKYNF000000000
SAMN33683717
A21/373-1
GCA_029097245.1ContigABKYNG000000000
SAMN33683722
A21/381-1
GCA_029097255.1ContigABKYNH000000000
SAMN33683720
A21/379-1
GCA_029097405.1ContigABKYNP000000000
SAMN33683715
A21/350-8
GCA_029097425.1ContigABKYNN000000000
SAMN33683713
A21/348-2
GCA_029097385.1ContigABKYNM000000000
SAMN33683711
A21/346-1
GCA_029097365.1ContigABKYNK000000000
SAMN33683725
A21/384-2
GCA_029097345.1ContigABKYNL000000000
SAMN33683710
A21/343-1
GCA_029097325.1ContigABKYNJ000000000
SAMN33683724
A21/383-3
GCA_029098805.1ContigABKYPG000000000
SAMN33683708
A21/341-4
GCA_029098785.1ContigABKYPF000000000
SAMN33683719
A21/375-1
GCA_029098545.1ContigABKYOU000000000
SAMN33683718
A21/374-1
GCA_029097065.1ContigABKYNE000000000
SAMN33683707
A21/340-1
GCA_029096625.1ContigABKYMH000000000
SAMN33683706
A21/339-1
GCA_028887205.1ContigABKUPH000000000
SAMN33483491
A21/326-2
GCA_028887145.1ContigABKUPJ000000000
SAMN33483483
A21/216-1
GCA_028887125.1ContigABKUPK000000000
SAMN33483485
A21/315-1
GCA_028886585.1ContigABKUOG000000000
SAMN33483492
A21/337-1
GCA_028886565.1ContigABKUOF000000000
SAMN33483490
A21/325-5
GCA_028886545.1ContigABKUOD000000000
SAMN33483489
A21/324-4
GCA_028886525.1ContigABKUOE000000000
SAMN33483488
A21/323-3
GCA_028886505.1ContigABKUOA000000000
SAMN33483486
A21/316-4
GCA_028886485.1ContigABKUOC000000000
SAMN33483487
A21/317-2
GCA_028886465.1ContigABKUNZ000000000
SAMN33483484
A21/314-2
GCA_028886445.1ContigABKUOB000000000
SAMN33483493
A21/338-2
SRA Data Details
ParameterValue
Data volume, Gbases968
Data volume, Tbytes0.53

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