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Accession: PRJNA258403 ID: 258403

Cronobacter

Cronobacter GenomeTrakr Project: FDA-CFSAN

Whole genome sequencing of cultured Cronobacter species as part of the FDA's Center for Food Safety and Applied Nutrition (CFSAN) surveillance project for rapid detection of foodborne illness outbreaks.
AccessionPRJNA258403
Data TypeGenome sequencing and assembly
ScopeMultispecies
Publications (total 9)
  • Jang H et al., "Whole-Genome Sequences of Cronobacter sakazakii Isolates Obtained from Foods of Plant Origin and Dried-Food Manufacturing Environments.", Genome Announc, 2018 Apr 12;6(15)
More...
SubmissionRegistration date: 21-Apr-2015
FDA/CFSAN
Related Resources
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)20933
WGS master1729
Genomic DNA158
SRA Experiments1695
Protein Sequences956660
Publications
PubMed9
PMC9
Other datasets
BioSample2042
Assembly1731
Assembly details:
Assembly levelNumber of Assemblies
2
58
1671
1731
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_034408785.1ContigABPLUI000000000
SAMN38447816
CFSAN135220
GCA_033897405.1ContigABPDBV000000000
SAMN38367968
CFSAN135118
GCA_033898165.1ContigABPDDC000000000
SAMN38369585
CFSAN135015
GCA_033898045.1ContigABPDCW000000000
SAMN38369640
CFSAN135065
GCA_033897625.1ContigABPDCB000000000
SAMN38366968
CFSAN134854
GCA_033897305.1ContigABPDBQ000000000
SAMN38368944
CFSAN134835
GCA_033960385.1ContigABPEDQ000000000
SAMN38447905
CFSAN135132
GCA_033960505.1ContigABPEDW000000000
SAMN38447869
CFSAN135080
GCA_033962475.1ContigABPEHM000000000
SAMN38447737
CFSAN134958
GCA_033944645.1ContigABPDRI000000000
SAMN38369897
CFSAN134974
GCA_033944565.1ContigABPDRF000000000
SAMN38369929
CFSAN135066
GCA_033944185.1ContigABPDQJ000000000
SAMN38370121
CFSAN134972
GCA_033944145.1ContigABPDQL000000000
SAMN38370102
CFSAN135089
GCA_033943705.1ContigABPDPN000000000
SAMN38370300
CFSAN134897
GCA_033941245.1ContigABPDKP000000000
SAMN38372182
CFSAN134889
GCA_033942165.1ContigABPDMO000000000
SAMN38371720
CFSAN135130
GCA_033942095.1ContigABPDMK000000000
SAMN38371721
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SAMN38371718
CFSAN134884
GCA_034257795.1ContigABPJCM000000000
SAMN38726040
CFSAN135601
GCA_032855805.1ContigABOCIH000000000
SAMN37872064
CFSAN133885
GCA_032855965.1ContigABOCIQ000000000
SAMN37872037
CFSAN133859
GCA_032856145.1ContigABOCIZ000000000
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CFSAN133844
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CFSAN133872
GCA_032856245.1ContigABOCJE000000000
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CFSAN133848
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SAMN37872176
CFSAN133890
GCA_032855705.1ContigABOCID000000000
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CFSAN133886
GCA_030735835.1ContigABLQAO000000000
SAMN36984290
CFSAN133213
GCA_030736055.1ContigABLQBF000000000
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CFSAN133260
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LMG 23824
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SAMN34999868
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SAMN34999914
MOD1-2-14
GCA_030025445.1ScaffoldJASEOI000000000
SAMN34999928
MOD1-KW5
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MOD1-3-27
GCA_030012155.1ContigJASDAB000000000
SAMN34997881
MOD1-E798
GCA_030012135.1ContigJASDAA000000000
SAMN34997882
MOD1-E799
GCA_030011995.1ContigJASCZZ000000000
SAMN34997883
MOD1-E791
GCA_030011965.1ContigJASDAH000000000
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MOD1-E465
GCA_030126425.1ContigJASKFQ000000000
SAMN35038572
MOD1-CR1541
GCA_030126405.1ContigJASKFJ000000000
SAMN35038563
MOD1-CR1148
GCA_030126385.1ContigJASKFP000000000
SAMN35038570
MOD1-CR1521
GCA_030126365.1ContigJASKFN000000000
SAMN35038568
MOD1-CR1504
GCA_028154205.1ContigABKINU000000000
SAMN32898213
CFSAN129044
GCA_028171845.1ContigABKIYH000000000
SAMN32912920
CFSAN129066
GCA_028638895.1ContigABKQLD000000000
SAMN33285600
CFSAN129437
GCA_026609995.2ContigABJQNI000000000
SAMN31997670
FDA1207441-S001-001
GCA_028216275.1ContigABKJWJ000000000
SAMN32942870
CFSAN129394
GCA_015350615.1ContigJADKRI000000000
SAMN14669707
MOD1_GK1518
GCA_015353245.1ContigJADKOA000000000
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CFSAN133866
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CFSAN133871
GCA_034264435.1ContigABPJMM000000000
SAMN38726041
CFSAN135602
GCA_033942945.1ContigABPDNW000000000
SAMN38370621
CFSAN135060
GCA_033942125.1ContigABPDMN000000000
SAMN38371722
CFSAN134818
GCA_033940385.1ContigABPDJC000000000
SAMN38372226
CFSAN134886
GCA_033945045.1ContigABPDSD000000000
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CFSAN134832
GCA_033944965.1ContigABPDRW000000000
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CFSAN134882
GCA_033944425.1ContigABPDQZ000000000
SAMN38369957
CFSAN134951
GCA_033944535.1ContigABPDRD000000000
SAMN38369955
CFSAN134952
GCA_033946905.1ContigABPDTW000000000
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CFSAN135106
GCA_033946945.1ContigABPDTX000000000
SAMN38369416
CFSAN135107
GCA_033962535.1ContigABPEHS000000000
SAMN38447732
CFSAN134916
GCA_033962675.1ContigABPEHV000000000
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CFSAN134955
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CFSAN134956
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CFSAN134920
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SAMN38447678
CFSAN134954
GCA_033963075.1ContigABPEII000000000
SAMN38447677
CFSAN134953
GCA_033963765.1ContigABPEJK000000000
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CFSAN134919
GCA_033960725.1ContigABPEEJ000000000
SAMN38447861
CFSAN135214
GCA_033961125.1ContigABPEFH000000000
SAMN38447828
CFSAN135006
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CFSAN134826
GCA_033896265.1ContigABPCZJ000000000
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CFSAN135114
GCA_033897445.1ContigABPDBW000000000
SAMN38368009
CFSAN135025
GCA_033896705.1ContigABPDAK000000000
SAMN38368946
CFSAN134979
GCA_034408585.1ContigABPLUF000000000
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CFSAN134810
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CFSAN138564
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LMG 23826
GCA_001922825.1ContigMSAD00000000
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MOD1-Md27g
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SAMN06100263
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MOD1_0939A-75
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SAMN33227556
CFSAN129040
GCA_028573735.1ContigABKOIE000000000
SAMN33227560
CFSAN129387
GCA_028574095.1ContigABKOIW000000000
SAMN33227561
CFSAN129399
GCA_028574075.1ContigABKOIY000000000
SAMN33227563
CFSAN129391
GCA_028573575.1ContigABKOHZ000000000
SAMN33227567
CFSAN129025
GCA_028573635.1ContigABKOHY000000000
SAMN33227564
CFSAN129390
GCA_028573645.1ContigABKOHW000000000
SAMN33227568
CFSAN129395
GCA_030126125.1ContigJASKFB000000000
SAMN35038506
MOD1-CQ4
GCA_030126595.1ContigJASKFZ000000000
SAMN35038554
MOD1-CR505
GCA_030126565.1ContigJASKFX000000000
SAMN35038549
MOD1-CR447
GCA_030126545.1ContigJASKFS000000000
SAMN35038543
MOD1-CR268
GCA_030126525.1ContigJASKFV000000000
SAMN35038546
MOD1-CR342
GCA_030126485.1ContigJASKFU000000000
SAMN35038545
MOD1-CR318
GCA_030126465.1ContigJASKFT000000000
SAMN35038544
MOD1-CR316
GCA_030126325.1ContigJASKFO000000000
SAMN35038569
MOD1-CR1516
GCA_030126305.1ContigJASKFM000000000
SAMN35038567
MOD1-CR1503
GCA_030025495.1ScaffoldJASEOU000000000
SAMN34999913
MOD1-3-24
GCA_030025585.1ContigJASEOV000000000
SAMN34999912
MOD1-5-15G
GCA_030025545.1ContigJASEOR000000000
SAMN34999915
MOD1-2-15
GCA_030026565.1ContigJASERB000000000
SAMN34999854
MOD1-E752
GCA_030012055.1ContigJASDAE000000000
SAMN34997878
MOD1-E626
GCA_030012035.1ContigJASDAC000000000
SAMN34997880
MOD1-E694
GCA_030012105.1ContigJASDAF000000000
SAMN34997877
MOD1-E866
GCA_030012185.1ContigJASCZX000000000
SAMN34997885
MOD1-E933
GCA_033941205.1ContigABPDKU000000000
SAMN38372184
CFSAN134941
GCA_033940045.1ContigABPDIM000000000
SAMN38372251
CFSAN135011
GCA_033962495.1ContigABPEHT000000000
SAMN38447740
CFSAN134960
GCA_033972325.1ContigABPETP000000000
SAMN38447957
CFSAN135200
GCA_000409325.1ContigAJKW00000000
SAMN02952930
NCTC 9529
GCA_030026745.1ScaffoldJASEQZ000000000
SAMN34999857
MOD1-CQ7
GCA_030165245.1ContigJASNFP000000000
SAMN35038508
MOD1-CQ119
GCA_000486025.1ContigAXDM00000000
SAMN02319257
z610
GCA_000485925.1ContigAVPP00000000
SAMN02319256
z508
SRA Data Details
ParameterValue
Data volume, Gbases664
Data volume, Tbytes0.38

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