human vaginal metagenome (ID 799737) - BioProject

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Accession: PRJNA799737 ID: 799737

human vaginal metagenome

Bactieral isolations derived from Vaginal Health Project samples

The Vaginal Health Project (VHP)described in Marrazzo et. al. 2008 Annals of Internal Medicine . More...

Accession	PRJNA799737
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	human vaginal metagenome[Taxonomy ID: 1632839] unclassified sequences; metagenomes; organismal metagenomes; human vaginal metagenome
Publications	Bloom SM et al., "Cysteine dependence of Lactobacillus iners is a potential therapeutic target for vaginal microbiota modulation.", Nat Microbiol, 2022 Mar;7(3):434-450
Submission	Registration date: 3-Mar-2022 Massachusetts General Hospital

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	111
Publications
PubMed	1
PMC	1
Other datasets
BioSample	111
Assembly	111

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

96
15
111

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_022458295.1	JAKXAD000000000	SAMN25207408	CM_B12_S858-bin_1	Lactobacillus crispatus
GCA_022458355.1	JAKXBB000000000	SAMN25207432	CM_E10_S845-bin_1	Lactobacillus crispatus
GCA_022458335.1	JAKXAU000000000	SAMN25207425	CM_D11_S852-bin_1	Lactobacillus crispatus
GCA_022458395.1	JAKXBM000000000	SAMN25207443	CM_G03_S791-bin_2	Lactobacillus crispatus
GCA_022458425.1	JAKXBO000000000	SAMN25207445	CM_G06_S815-bin_2	Lactobacillus crispatus
GCA_022458415.1	JAKXBN000000000	SAMN25207444	CM_G04_S799-bin_2	Lactobacillus crispatus
GCA_022458455.1	JAKXBP000000000	SAMN25207446	CM_G07_S823-bin_1	Lactobacillus crispatus
GCA_022458635.1	JAKXDU000000000	SAMN25207503	Mitchell_12_29_17_G06_S623-bin_1	Lactobacillus crispatus
GCA_022458615.1	JAKXDR000000000	SAMN25207500	Mitchell_12_29_17_E07_S629-bin_2	Lactobacillus crispatus
GCA_022458595.1	JAKXDE000000000	SAMN25207487	DZD_CM_33_S801-bin_3	Lactobacillus crispatus
GCA_022458575.1	JAKXDA000000000	SAMN25207483	DZD_CM_29_S797-bin_2	Lactobacillus crispatus
GCA_022458555.1	JAKXCX000000000	SAMN25207480	DZD_CM_25_S793-bin_3	Lactobacillus crispatus
GCA_022458535.1	JAKXCN000000000	SAMN25207470	DZD_CM_14_S782-bin_2	Lactobacillus crispatus
GCA_022458515.1	JAKXBU000000000	SAMN25207451	CM_H01_S776-bin_1	Lactobacillus crispatus
GCA_022458495.1	JAKXCH000000000	SAMN25207464	DZD_CM_08_S776-bin_1	Lactobacillus crispatus
GCA_022458475.1	JAKXBS000000000	SAMN25207449	CM_G11_S855-bin_1	Lactobacillus crispatus
GCA_022458285.1	JAKWZU000000000	SAMN25207399	CM_A05_S801-bin_4	Lactobacillus crispatus
GCA_022458365.1	JAKXAV000000000	SAMN25207426	CM_E02_S781-bin_3	Lactobacillus crispatus
GCA_022456295.1	JAKXAG000000000	SAMN25207411	CM_C04_S795-bin_1	Lactobacillus crispatus
GCA_022455755.1	JAKWZQ000000000	SAMN25207395	CM_A01_S769-bin_1	Lactobacillus crispatus
GCA_022455735.1	JAKWZT000000000	SAMN25207398	CM_A04_S793-bin_1	Lactobacillus crispatus
GCA_022455705.1	JAKWZS000000000	SAMN25207397	CM_A03_S785-bin_1	Lactobacillus crispatus
GCA_022455695.1	JAKWZR000000000	SAMN25207396	CM_A02_S777-bin_1	Lactobacillus crispatus
GCA_022455675.1	JAKWZW000000000	SAMN25207401	CM_A08_S825-bin_2	Lactobacillus crispatus
GCA_022455655.1	JAKWZV000000000	SAMN25207400	CM_A06_S809-bin_1	Lactobacillus crispatus
GCA_022455635.1	JAKWZX000000000	SAMN25207402	CM_B01_S770-bin_1	Lactobacillus crispatus
GCA_022455615.1	JAKWZY000000000	SAMN25207403	CM_B02_S778-bin_1	Lactobacillus crispatus
GCA_022455595.1	JAKWZZ000000000	SAMN25207404	CM_B03_S786-bin_1	Lactobacillus crispatus
GCA_022455575.1	JAKXAA000000000	SAMN25207405	CM_B04_S794-bin_1	Lactobacillus crispatus
GCA_022455555.1	JAKXAB000000000	SAMN25207406	CM_B07_S818-bin_1	Lactobacillus crispatus
GCA_022455535.1	JAKXAF000000000	SAMN25207410	CM_C03_S787-bin_2	Lactobacillus crispatus
GCA_022455515.1	JAKXAC000000000	SAMN25207407	CM_B09_S834-bin_1	Lactobacillus crispatus
GCA_022455485.1	JAKXAI000000000	SAMN25207413	CM_C07_S819-bin_2	Lactobacillus crispatus
GCA_022455475.1	JAKXAH000000000	SAMN25207412	CM_C05_S803-bin_1	Lactobacillus crispatus
GCA_022455455.1	JAKXAE000000000	SAMN25207409	CM_C01_S771-bin_1	Lactobacillus crispatus
GCA_022455415.1	JAKXAK000000000	SAMN25207415	CM_C10_S843-bin_1	Lactobacillus crispatus
GCA_022455395.1	JAKXAM000000000	SAMN25207417	CM_D02_S780-bin_1	Lactobacillus crispatus
GCA_022455375.1	JAKXAO000000000	SAMN25207419	CM_D04_S796-bin_1	Lactobacillus crispatus
GCA_022455355.1	JAKXAN000000000	SAMN25207418	CM_D03_S788-bin_1	Lactobacillus crispatus
GCA_022455325.1	JAKXAP000000000	SAMN25207420	CM_D05_S804-bin_1	Lactobacillus crispatus
GCA_022455315.1	JAKXAQ000000000	SAMN25207421	CM_D07_S820-bin_2	Lactobacillus crispatus
GCA_022455295.1	JAKXAS000000000	SAMN25207423	CM_D09_S836-bin_1	Lactobacillus crispatus
GCA_022455255.1	JAKXAR000000000	SAMN25207422	CM_D08_S828-bin_2	Lactobacillus crispatus
GCA_022455265.1	JAKXAT000000000	SAMN25207424	CM_D10_S844-bin_2	Lactobacillus crispatus
GCA_022455235.1	JAKXAW000000000	SAMN25207427	CM_E03_S789-bin_1	Lactobacillus crispatus
GCA_022455205.1	JAKXAY000000000	SAMN25207429	CM_E07_S821-bin_1	Lactobacillus crispatus
GCA_022455185.1	JAKXBA000000000	SAMN25207431	CM_E09_S837-bin_2	Lactobacillus crispatus
GCA_022455175.1	JAKXAX000000000	SAMN25207428	CM_E04_S797-bin_1	Lactobacillus crispatus
GCA_022455155.1	JAKXAZ000000000	SAMN25207430	CM_E08_S829-bin_1	Lactobacillus crispatus
GCA_022455135.1	JAKXBC000000000	SAMN25207433	CM_F02_S782-bin_2	Lactobacillus crispatus
GCA_022455115.1	JAKXBG000000000	SAMN25207437	CM_F07_S822-bin_1	Lactobacillus crispatus
GCA_022455005.1	JAKXBI000000000	SAMN25207439	CM_F09_S838-bin_1	Lactobacillus crispatus
GCA_022454965.1	JAKXBJ000000000	SAMN25207440	CM_F10_S846-bin_1	Lactobacillus crispatus
GCA_022454955.1	JAKXBL000000000	SAMN25207442	CM_G02_S783-bin_1	Lactobacillus crispatus
GCA_022454935.1	JAKXBQ000000000	SAMN25207447	CM_G08_S831-bin_2	Lactobacillus crispatus
GCA_022454915.1	JAKXBR000000000	SAMN25207448	CM_G10_S847-bin_1	Lactobacillus crispatus
GCA_022454865.1	JAKXBV000000000	SAMN25207452	CM_H02_S784-bin_1	Lactobacillus crispatus
GCA_022454895.1	JAKXBT000000000	SAMN25207450	CM_G12_S863-bin_1	Lactobacillus crispatus
GCA_022454845.1	JAKXBX000000000	SAMN25207454	CM_H04_S800-bin_1	Lactobacillus crispatus
GCA_022454835.1	JAKXBW000000000	SAMN25207453	CM_H03_S792-bin_1	Lactobacillus crispatus
GCA_022454815.1	JAKXBZ000000000	SAMN25207456	CM_H07_S824-bin_1	Lactobacillus crispatus
GCA_022454795.1	JAKXBY000000000	SAMN25207455	CM_H05_S808-bin_2	Lactobacillus crispatus
GCA_022454765.1	JAKXCA000000000	SAMN25207457	CM_H09_S840-bin_1	Lactobacillus crispatus
GCA_022454755.1	JAKXCB000000000	SAMN25207458	DZD_CM_01_S769-bin_1	Lactobacillus crispatus
GCA_022454735.1	JAKXCC000000000	SAMN25207459	DZD_CM_02_S770-bin_1	Lactobacillus crispatus
GCA_022454705.1	JAKXCF000000000	SAMN25207462	DZD_CM_05_S773-bin_1	Lactobacillus crispatus
GCA_022454695.1	JAKXCD000000000	SAMN25207460	DZD_CM_03_S771-bin_1	Lactobacillus crispatus
GCA_022454675.1	JAKXCI000000000	SAMN25207465	DZD_CM_09_S777-bin_1	Lactobacillus crispatus
GCA_022454655.1	JAKXCJ000000000	SAMN25207466	DZD_CM_10_S778-bin_2	Lactobacillus crispatus
GCA_022455065.1	JAKXBD000000000	SAMN25207434	CM_F04_S798-bin_1	Lactobacillus crispatus
GCA_022455055.1	JAKXBF000000000	SAMN25207436	CM_F06_S814-bin_1	Lactobacillus crispatus
GCA_022455035.1	JAKXBH000000000	SAMN25207438	CM_F08_S830-bin_1	Lactobacillus crispatus
GCA_022454615.1	JAKXCE000000000	SAMN25207461	DZD_CM_04_S772-bin_1	Lactobacillus crispatus
GCA_022454565.1	JAKXCM000000000	SAMN25207469	DZD_CM_13_S781-bin_1	Lactobacillus crispatus
GCA_022454555.1	JAKXCK000000000	SAMN25207467	DZD_CM_11_S779-bin_1	Lactobacillus crispatus
GCA_022454535.1	JAKXCO000000000	SAMN25207471	DZD_CM_15_S783-bin_1	Lactobacillus crispatus
GCA_022454515.1	JAKXCQ000000000	SAMN25207473	DZD_CM_17_S785-bin_1	Lactobacillus crispatus
GCA_022454495.1	JAKXCR000000000	SAMN25207474	DZD_CM_19_S787-bin_1	Lactobacillus crispatus
GCA_022454475.1	JAKXCP000000000	SAMN25207472	DZD_CM_16_S784-bin_1	Lactobacillus crispatus
GCA_022454205.1	JAKXDI000000000	SAMN25207491	Mitchell_12_29_17_A05_S609-bin_1	Lactobacillus crispatus
GCA_022453955.1	JAKXDV000000000	SAMN25207504	Mitchell_12_29_17_H06_S624-bin_1	Lactobacillus crispatus
GCA_022454435.1	JAKXCT000000000	SAMN25207476	DZD_CM_21_S789-bin_1	Lactobacillus crispatus
GCA_022454395.1	JAKXCW000000000	SAMN25207479	DZD_CM_24_S792-bin_1	Lactobacillus crispatus
GCA_022454385.1	JAKXCV000000000	SAMN25207478	DZD_CM_23_S791-bin_1	Lactobacillus crispatus
GCA_022454375.1	JAKXCU000000000	SAMN25207477	DZD_CM_22_S790-bin_1	Lactobacillus crispatus
GCA_022454355.1	JAKXCZ000000000	SAMN25207482	DZD_CM_27_S795-bin_1	Lactobacillus crispatus
GCA_022454335.1	JAKXCY000000000	SAMN25207481	DZD_CM_26_S794-bin_2	Lactobacillus crispatus
GCA_022454315.1	JAKXDC000000000	SAMN25207485	DZD_CM_31_S799-bin_2	Lactobacillus crispatus
GCA_022454285.1	JAKXDD000000000	SAMN25207486	DZD_CM_32_S800-bin_1	Lactobacillus crispatus
GCA_022454275.1	JAKXDB000000000	SAMN25207484	DZD_CM_30_S798-bin_2	Lactobacillus crispatus
GCA_022454175.1	JAKXDJ000000000	SAMN25207492	Mitchell_12_29_17_A06_S617-bin_1	Lactobacillus crispatus
GCA_022454155.1	JAKXDM000000000	SAMN25207495	Mitchell_12_29_17_C03_S595-bin_1	Lactobacillus crispatus
GCA_022454135.1	JAKXDK000000000	SAMN25207493	Mitchell_12_29_17_B05_S610-bin_1	Lactobacillus crispatus
GCA_022454115.1	JAKXDL000000000	SAMN25207494	Mitchell_12_29_17_B07_S626-bin_1	Lactobacillus crispatus
GCA_022454095.1	JAKXDO000000000	SAMN25207497	Mitchell_12_29_17_C05_S611-bin_1	Lactobacillus crispatus
GCA_022454075.1	JAKXDN000000000	SAMN25207496	Mitchell_12_29_17_C04_S603-bin_1	Lactobacillus crispatus
GCA_022454055.1	JAKXDP000000000	SAMN25207498	Mitchell_12_29_17_C07_S627-bin_2	Lactobacillus crispatus
GCA_022454025.1	JAKXDW000000000	SAMN25207505	Mitchell_12_29_17_H07_S632-bin_1	Lactobacillus crispatus
GCA_022454015.1	JAKXDS000000000	SAMN25207501	Mitchell_12_29_17_F06_S622-bin_1	Lactobacillus crispatus
GCA_022453975.1	JAKXDQ000000000	SAMN25207499	Mitchell_12_29_17_E06_S621-bin_1	Lactobacillus crispatus
GCA_022454995.1	JAKXBK000000000	SAMN25207441	CM_F11_S854-bin_1	Lactobacillus jensenii
GCA_022454595.1	JAKXCL000000000	SAMN25207468	DZD_CM_12_S780-bin_1	Lactobacillus jensenii
GCA_022457015.1	JAKXAJ000000000	SAMN25207414	CM_C09_S835-bin_1	Lactobacillus jensenii
GCA_022453965.1	JAKXDT000000000	SAMN25207502	Mitchell_12_29_17_G03_S599-bin_1	Lactobacillus jensenii
GCA_022454245.1	JAKXDF000000000	SAMN25207488	DZD_CM_35_S803-bin_1	Lactobacillus jensenii
GCA_022454235.1	JAKXDG000000000	SAMN25207489	DZD_CM_36_S804-bin_1	Lactobacillus jensenii
GCA_022454195.1	JAKXDH000000000	SAMN25207490	DZD_CM_38_S806-bin_1	Lactobacillus jensenii
GCA_022454455.1	JAKXCS000000000	SAMN25207475	DZD_CM_20_S788-bin_1	Lactobacillus mulieris
GCA_022454635.1	JAKXCG000000000	SAMN25207463	DZD_CM_06_S774-bin_1	Lactobacillus mulieris
GCA_022455095.1	JAKXBE000000000	SAMN25207435	CM_F05_S806-bin_1	Lactobacillus mulieris
GCA_022455405.1	JAKXAL000000000	SAMN25207416	CM_D01_S772-bin_1	Lactobacillus mulieris

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human vaginal metagenome

Bactieral isolations derived from Vaginal Health Project samples

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