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Accession: PRJNA324567 ID: 324567

Staphylococcus

Vet-LIRN-Staph-NY

See Genome Information for Staphylococcus
Veterinary Pathogens sequenced as part of the effort to enhance FDA’s database for source-tracking outbreak strains.
AccessionPRJNA324567
Data TypeGenome sequencing and assembly
ScopeMultispecies
OrganismStaphylococcus[Taxonomy ID: 1279]
Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus
Grants
  • "Capacity for CARB WGS Surveillance at Cornell AHDC" (Grant ID U18 FD006716, Food and Drug Administration)
SubmissionRegistration date: 20-Nov-2020
Vet-LIRN-CVM-FDA
RelevanceVeterinary Medicine
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)419
SRA Experiments431
Other datasets
BioSample429
Assembly419
Assembly details:
Assembly levelNumber of Assemblies
419
419
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_028915365.1ContigABKVOV000000000SAMN33436733
SPSE-21-VL-NY-FL-0032
GCA_028914925.1ContigABKVOC000000000SAMN33436847
SPSE-21-VL-NY-NCR-0027
GCA_028914905.1ContigABKVOB000000000SAMN33436845
SPSE-21-VL-NY-FL-0020
GCA_028914885.1ContigABKVOD000000000SAMN33436846
SPSE-21-VL-NY-FL-0024
GCA_028914865.1ContigABKVNZ000000000SAMN33436843
SPSE-21-VL-NY-FL-0023
GCA_028914805.1ContigABKVNX000000000SAMN33436841
SPSE-21-VL-NY-FL-0014
GCA_028914845.1ContigABKVNY000000000SAMN33436842
SPSE-21-VL-NY-NCR-0025
GCA_028914825.1ContigABKVOA000000000SAMN33436844
SPSE-21-VL-NY-NCR-0026
GCA_028914785.1ContigABKVNW000000000SAMN33436840
SPSE-21-VL-NY-NCR-0022
GCA_028914765.1ContigABKVNV000000000SAMN33436850
SPSE-21-VL-NY-MS-0026
GCA_028914725.1ContigABKVNU000000000SAMN33436849
SPSE-21-VL-NY-NCR-0029
GCA_028914745.1ContigABKVNT000000000SAMN33436848
SPSE-21-VL-NY-MS-0007
GCA_028914685.1ContigABKVNR000000000SAMN33436838
SPSE-21-VL-NY-MS-0036
GCA_028914695.1ContigABKVNS000000000SAMN33436839
SPSE-21-VL-NY-FL-0013
GCA_028916665.1ContigABKVRM000000000SAMN33435992
SPSE-21-VL-NY-NCR-0042
GCA_028916105.1ContigABKVQK000000000SAMN33436660
SPSE-21-VL-NY-MS-0042
GCA_028916825.1ContigABKVRT000000000SAMN33435999
SPSE-21-VL-NY-NCR-0034
GCA_028916805.1ContigABKVRS000000000SAMN33435998
SPSE-21-VL-NY-FL-0044
GCA_028916785.1ContigABKVRQ000000000SAMN33435996
SPSE-21-VL-NY-FL-0041
GCA_028916765.1ContigABKVRR000000000SAMN33435997
SPSE-21-VL-NY-FL-0043
GCA_028916745.1ContigABKVRN000000000SAMN33435993
SPSE-21-VL-NY-FL-0038
GCA_028916725.1ContigABKVRP000000000SAMN33435995
SPSE-21-VL-NY-FL-0040
GCA_028916705.1ContigABKVRO000000000SAMN33435994
SPSE-21-VL-NY-NCR-0045
GCA_028916685.1ContigABKVRK000000000SAMN33435991
SPSE-21-VL-NY-NCR-0038
GCA_028863055.1ContigABKUGR000000000SAMN33436732
SPSE-21-VL-NY-FL-0031
GCA_028862015.1ContigABKUFS000000000SAMN33436729
SPSE-21-VL-NY-FL-0034
GCA_028861995.1ContigABKUFT000000000SAMN33436730
SPSE-21-VL-NY-FL-0035
GCA_028862595.1ContigABKUGJ000000000SAMN33436731
SPSE-21-VL-NY-FL-0029
GCA_028850885.1ContigABKTNW000000000SAMN33426836
SPSE-21-VL-NY-GA-0034
GCA_028850865.1ContigABKTNX000000000SAMN33426837
SPSE-21-VL-NY-GA-0036
GCA_028850845.1ContigABKTNU000000000SAMN33426835
SPSE-21-VL-NY-GA-0033
GCA_028850825.1ContigABKTNR000000000SAMN33426834
SPSE-21-VL-NY-MS-0046
GCA_028850785.1ContigABKTNS000000000SAMN33426833
SPSE-21-VL-NY-MS-0037
GCA_028850625.1ContigABKTNI000000000SAMN33426901
SPSE-21-VL-NY-GA-0038
GCA_028850605.1ContigABKTNJ000000000SAMN33426902
SPSE-21-VL-NY-MS-0039
GCA_028850925.1ContigABKTNY000000000SAMN33426838
SPSE-21-VL-NY-GA-0040
GCA_028850565.1ContigABKTNH000000000SAMN33426900
SPSE-21-VL-NY-MS-0047
GCA_024856025.1ContigABHSUO000000000SAMN30603987
SPSE-21-VL-NY-NCR-0033
GCA_024856005.1ContigABHSUN000000000SAMN30603984
SPSE-21-VL-NY-GA-0027
GCA_024855445.1ContigABHSTL000000000SAMN30603986
SPSE-21-VL-NY-GA-0031
GCA_024855405.1ContigABHSTK000000000SAMN30603985
SPSE-21-VL-NY-GA-0028
GCA_024855385.1ContigABHSTJ000000000SAMN30603983
SPSE-21-VL-NY-GA-0026
GCA_024855365.1ContigABHSTI000000000SAMN30603982
SPSE-21-VL-NY-GA-0021
GCA_024855345.1ContigABHSTH000000000SAMN30603989
SPSE-21-VL-NY-MS-0031
GCA_024855325.1ContigABHSTG000000000SAMN30603988
SPSE-21-VL-NY-MS-0028
GCA_032037135.1ContigABMZLT000000000SAMN36772682
SPSE-22-VL-NY-GA-0027
GCA_032037115.1ContigABMZLS000000000SAMN36772681
SPSE-22-VL-NY-MS-0033
GCA_032037095.1ContigABMZLR000000000SAMN36772680
SPSE-22-VL-NY-GA-0025
GCA_032037075.1ContigABMZLQ000000000SAMN36772691
SPSE-22-VL-NY-NCR-0034
GCA_032037055.1ContigABMZLP000000000SAMN36772689
SPSE-22-VL-NY-NCR-0028
GCA_032037035.1ContigABMZLO000000000SAMN36772690
SPSE-22-VL-NY-NCR-0031
GCA_032037005.1ContigABMZLN000000000SAMN36772688
SPSE-22-VL-NY-MS-0025
GCA_032036995.1ContigABMZLM000000000SAMN36772679
SPSE-22-VL-NY-MS-0031
GCA_032037275.1ContigABMZLW000000000SAMN36772686
SPSE-22-VL-NY-GA-0030
GCA_032037255.1ContigABMZLX000000000SAMN36772685
SPSE-22-VL-NY-NCR-0026
GCA_032037235.1ContigABMZLV000000000SAMN36772684
SPSE-22-VL-NY-GA-0028
GCA_032037195.1ContigABMZLU000000000SAMN36772683
SPSE-22-VL-NY-MS-0036
GCA_032037315.1ContigABMZLY000000000SAMN36772687
SPSE-22-VL-NY-NCR-0027
GCA_032036975.1ContigABMZLL000000000SAMN36773006
SPSE-22-VL-NY-MS-0027
GCA_032036955.1ContigABMZLK000000000SAMN36772678
SPSE-22-VL-NY-GA-0024
GCA_032036635.1ContigABMZKV000000000SAMN36773155
SPSE-22-VL-NY-FL-0032
GCA_032036645.1ContigABMZKU000000000SAMN36773154
SPSE-22-VL-NY-FL-0030
GCA_032036615.1ContigABMZKT000000000SAMN36773153
SPSE-22-VL-NY-FL-0027
GCA_032036595.1ContigABMZKS000000000SAMN36773152
SPSE-22-VL-NY-FL-0026
GCA_032078865.1ContigABMZYJ000000000SAMN37546461
SPSE-22-VL-NY-GA-0032
GCA_032078825.1ContigABMZYM000000000SAMN37546462
SPSE-22-VL-NY-GA-0033
GCA_032079505.1ContigABMZZA000000000SAMN37546378
SPSE-22-VL-NY-NCR-0038
GCA_032079285.1ContigABMZYX000000000SAMN37546375
SPSE-22-VL-NY-MS-0040
GCA_032079265.1ContigABMZYW000000000SAMN37546374
SPSE-22-VL-NY-NCR-0043
GCA_032079245.1ContigABMZYV000000000SAMN37546373
SPSE-22-VL-NY-NCR-0042
GCA_032079345.1ContigABMZYZ000000000SAMN37546377
SPSE-22-VL-NY-MS-0046
GCA_032079325.1ContigABMZYY000000000SAMN37546376
SPSE-22-VL-NY-NCR-0037
GCA_032079465.1ContigABMZZB000000000SAMN37546379
SPSE-22-VL-NY-MS-0048
GCA_032078645.1ContigABMZYI000000000SAMN37546458
SPSE-22-VL-NY-FL-0042
GCA_032078745.1ContigABMZYK000000000SAMN37546459
SPSE-22-VL-NY-FL-0039
GCA_032078665.1ContigABMZYH000000000SAMN37546456
SPSE-22-VL-NY-FL-0037
GCA_032078625.1ContigABMZYG000000000SAMN37546457
SPSE-22-VL-NY-GA-0039
GCA_032078765.1ContigABMZYL000000000SAMN37546460
SPSE-22-VL-NY-FL-0047
GCA_032078545.1ContigABMZYF000000000SAMN37546455
SPSE-22-VL-NY-GA-0037
GCA_032078525.1ContigABMZYC000000000SAMN37546454
SPSE-22-VL-NY-GA-0034
GCA_032233875.1ContigABNDLQ000000000SAMN37588864
SPSE-22-VL-NY-FL-0035
GCA_032233955.1ContigABNDLT000000000SAMN37588866
SPSE-22-VL-NY-MS-0041
GCA_032233935.1ContigABNDLS000000000SAMN37588867
SPSE-22-VL-NY-NCR-0040
GCA_032233915.1ContigABNDLR000000000SAMN37588865
SPSE-22-VL-NY-MS-0037
GCA_032317415.1ContigABNGQW000000000SAMN36748413
SPSE-22-VL-NY-GA-0014
GCA_032315575.1ContigABNGOF000000000SAMN36748512
SPSE-22-VL-NY-FL-0015
GCA_032315535.1ContigABNGOC000000000SAMN36748511
SPSE-22-VL-NY-FL-0012
GCA_032315035.1ContigABNGND000000000SAMN36748570
SPSE-22-VL-NY-MS-0022
GCA_032315355.1ContigABNGNU000000000SAMN36748542
SPSE-22-VL-NY-NCR-0020
GCA_032315335.1ContigABNGNV000000000SAMN36748541
SPSE-22-VL-NY-NCR-0019
GCA_032315315.1ContigABNGNS000000000SAMN36748539
SPSE-22-VL-NY-MS-0020
GCA_032315285.1ContigABNGNR000000000SAMN36748538
SPSE-22-VL-NY-MS-0019
GCA_032315275.1ContigABNGNT000000000SAMN36748540
SPSE-22-VL-NY-NCR-0015
GCA_032315255.1ContigABNGNP000000000SAMN36748537
SPSE-22-VL-NY-MS-0018
GCA_032315235.1ContigABNGNQ000000000SAMN36748536
SPSE-22-VL-NY-NCR-0022
GCA_032315215.1ContigABNGNN000000000SAMN36748535
SPSE-22-VL-NY-MS-0015
GCA_032316095.1ContigABNGOX000000000SAMN36748516
SPSE-22-VL-NY-GA-0021
GCA_032316075.1ContigABNGOW000000000SAMN36748515
SPSE-22-VL-NY-FL-0018
GCA_032316055.1ContigABNGOV000000000SAMN36748514
SPSE-22-VL-NY-GA-0018
GCA_032316035.1ContigABNGOT000000000SAMN36748513
SPSE-22-VL-NY-FL-0017
GCA_032316015.1ContigABNGOS000000000SAMN36748510
SPSE-22-VL-NY-FL-0021
GCA_032316455.1ContigABNGPP000000000SAMN36748414
SPSE-22-VL-NY-GA-0016
GCA_032316415.1ContigABNGPM000000000SAMN36748412
SPSE-22-VL-NY-GA-0013
GCA_032319435.1ContigABNGUI000000000SAMN36748223
SPSE-22-VL-NY-GA-0008
GCA_032319415.1ContigABNGUJ000000000SAMN36748224
SPSE-22-VL-NY-FL-0011
GCA_032319375.1ContigABNGUH000000000SAMN36748222
SPSE-22-VL-NY-FL-0010
GCA_032319355.1ContigABNGUG000000000SAMN36748221
SPSE-22-VL-NY-GA-0005
GCA_032319335.1ContigABNGUF000000000SAMN36748220
SPSE-22-VL-NY-FL-0009
GCA_032319315.1ContigABNGUE000000000SAMN36748219
SPSE-22-VL-NY-GA-0003
GCA_032319295.1ContigABNGUD000000000SAMN36748218
SPSE-22-VL-NY-FL-0008
GCA_032319275.1ContigABNGUC000000000SAMN36748217
SPSE-22-VL-NY-GA-0002
GCA_032319255.1ContigABNGUB000000000SAMN36748216
SPSE-22-VL-NY-FL-0006
GCA_032319235.1ContigABNGUA000000000SAMN36748215
SPSE-22-VL-NY-GA-0001
GCA_032318555.1ContigABNGST000000000SAMN36748271
SPSE-22-VL-NY-MS-0005
GCA_032318695.1ContigABNGSX000000000SAMN36748274
SPSE-22-VL-NY-NCR-0003
GCA_032318675.1ContigABNGSY000000000SAMN36748275
SPSE-22-VL-NY-NCR-0005
GCA_032318655.1ContigABNGSZ000000000SAMN36748276
SPSE-22-VL-NY-NCR-0007
GCA_032318635.1ContigABNGSW000000000SAMN36748273
SPSE-22-VL-NY-MS-0009
GCA_032318615.1ContigABNGSV000000000SAMN36748272
SPSE-22-VL-NY-MS-0007
GCA_032318505.1ContigABNGSQ000000000SAMN36748269
SPSE-22-VL-NY-MS-0004
GCA_032318495.1ContigABNGSR000000000SAMN36748270
SPSE-22-VL-NY-NCR-0011
GCA_032318475.1ContigABNGSP000000000SAMN36748268
SPSE-22-VL-NY-NCR-0010
GCA_042691835.1ContigABVTRO000000000SAMN44048138
SPSE-24-VL-NY-MS-0009
GCA_042691815.1ContigABVTRP000000000SAMN44048137
SPSE-24-VL-NY-MS-0004
GCA_042691795.1ContigABVTRL000000000SAMN44048136
SPSE-24-VL-NY-NCR-0007
GCA_042691775.1ContigABVTRM000000000SAMN44048134
SPSE-24-VL-NY-GA-0008
GCA_042691755.1ContigABVTRN000000000SAMN44048135
SPSE-24-VL-NY-NCR-0003
GCA_042691735.1ContigABVTRK000000000SAMN44048133
SPSE-24-VL-NY-GA-0003
GCA_042691705.1ContigABVTRJ000000000SAMN44048132
SPSE-24-VL-NY-FL-0008
GCA_042693375.1ContigABVTUH000000000SAMN44048131
SPSE-24-VL-NY-FL-0002
GCA_040801575.1ContigABTORE000000000SAMN42654512
SPSE-23-VL-NY-GA-0017
GCA_040801555.1ContigABTORI000000000SAMN42654516
SPSE-23-VL-NY-FL-0024
GCA_040801535.1ContigABTORH000000000SAMN42654513
SPSE-23-VL-NY-FL-0005
GCA_041264145.1ContigABUAAO000000000SAMN43148105
SPSE-22-VL-NY-MS-0002
GCA_041264165.1ContigABUAAT000000000SAMN43148720
SPSE-23-VL-NY-NCR-0027
GCA_041267925.1ContigABUAHS000000000SAMN43148671
SPSE-23-VL-NY-FL-0032
GCA_041263945.1ContigABUAAA000000000SAMN43148721
SPSE-23-VL-NY-NCR-0034
GCA_041264105.1ContigABUAAN000000000SAMN43148104
SPSE-23-VL-NY-MS-0018
GCA_041264085.1ContigABUAAM000000000SAMN43148232
SPSE-23-VL-NY-NCR-0015
GCA_041264065.1ContigABUAAL000000000SAMN43148233
SPSE-23-VL-NY-NCR-0019
GCA_041264045.1ContigABUAAI000000000SAMN43148675
SPSE-23-VL-NY-FL-0031
GCA_041264005.1ContigABUAAH000000000SAMN43148674
SPSE-23-VL-NY-MS-0025
GCA_041264025.1ContigABUAAK000000000SAMN43148231
SPSE-23-VL-NY-MS-0021
GCA_041263985.1ContigABUAAG000000000SAMN43148672
SPSE-23-VL-NY-GA-0018
GCA_041263965.1ContigABUAAJ000000000SAMN43148673
SPSE-23-VL-NY-GA-0020
GCA_041266745.1ContigABUAFM000000000SAMN43148722
SPSE-23-VL-NY-MS-0034
GCA_041372415.1ContigABUDXA000000000SAMN43262637
SPSE-23-VL-NY-MS-0043
GCA_041372375.1ContigABUDXB000000000SAMN43262636
SPSE-23-VL-NY-FL-0047
GCA_041372355.1ContigABUDWZ000000000SAMN43262634
SPSE-23-VL-NY-GA-0025
GCA_041372335.1ContigABUDWW000000000SAMN43262632
SPSE-23-VL-NY-GA-0024
GCA_041372315.1ContigABUDWY000000000SAMN43262635
SPSE-23-VL-NY-MS-0042
GCA_041372295.1ContigABUDWX000000000SAMN43262633
SPSE-23-VL-NY-FL-0042
GCA_041445405.1ContigABUFXR000000000SAMN43305525
SPSE-22-VL-NY-FL-0044
GCA_041444685.1ContigABUFWI000000000SAMN43305524
SPSE-23-VL-NY-NCR-0036
GCA_044488325.1ContigABWDEU000000000SAMN44571528
SPSE-24-VL-NY-FL-0020
GCA_044503625.1ContigABWDJI000000000SAMN44574349
SPSE-24-VL-NY-MS-0024
GCA_044503605.1ContigABWDJF000000000SAMN44574347
SPSE-24-VL-NY-NCR-0010
GCA_044503585.1ContigABWDJH000000000SAMN44574348
SPSE-24-VL-NY-NCR-0015
GCA_044503565.1ContigABWDJE000000000SAMN44574345
SPSE-24-VL-NY-GA-0011
GCA_044503545.1ContigABWDJG000000000SAMN44574346
SPSE-24-VL-NY-GA-0013
GCA_044486225.1ContigABWDCB000000000SAMN44571529
SPSE-24-VL-NY-MS-0017
GCA_045508845.1ContigABWNJE000000000SAMN45045619
SPSE-23-VL-NY-NCR-0041
GCA_045782815.1ContigABWQCB000000000SAMN44571527
SPSE-24-VL-NY-FL-0017
GCA_040784615.1ContigABTOLH000000000SAMN42654514
SPSE-23-VL-NY-FL-0016
GCA_040784575.1ContigABTOLM000000000SAMN42654515
SPSE-23-VL-NY-FL-0010
GCA_040784535.1ContigABTOLG000000000SAMN42652167
SPSE-23-VL-NY-GA-0005
GCA_040784735.1ContigABTOLQ000000000SAMN42652169
SPSE-23-VL-NY-MS-0012
GCA_040784715.1ContigABTOLP000000000SAMN42652166
SPSE-23-VL-NY-GA-0002
GCA_040784695.1ContigABTOLR000000000SAMN42652168
SPSE-23-VL-NY-MS-0011
GCA_040784675.1ContigABTOLL000000000SAMN42654517
SPSE-23-VL-NY-GA-0016
GCA_040784775.1ContigABTOLT000000000SAMN42652170
SPSE-23-VL-NY-NCR-0003
GCA_040784815.1ContigABTOLS000000000SAMN42652171
SPSE-23-VL-NY-NCR-0005
GCA_017184435.1ContigAAZFBB000000000SAMN17703542
SPSE-20-VL-NY-GA-0002
GCA_017184415.1ContigAAZFAZ000000000SAMN17703541
SPSE-20-VL-NY-MS-0024
GCA_017184375.1ContigAAZFAM000000000SAMN17703540
SPSE-20-VL-NY-MS-0023
GCA_017184395.1ContigAAZFAN000000000SAMN17703539
SPSE-20-VL-NY-MS-0021
GCA_017184355.1ContigAAZFAR000000000SAMN17703538
SPSE-20-VL-NY-MS-0020
GCA_017184335.1ContigAAZFAQ000000000SAMN17703537
SPSE-20-VL-NY-MS-0019
GCA_019812555.1ContigABCEOC000000000SAMN21040451
SPSE-20-VL-NY-MS-0038
GCA_019812535.1ContigABCEOK000000000SAMN21040424
SPSE-20-VL-NY-MS-0029
GCA_019812515.1ContigABCEOD000000000SAMN21040423
SPSE-20-VL-NY-MS-0033
GCA_019812475.1ContigABCEOA000000000SAMN21040448
SPSE-20-VL-NY-NCR-0042
GCA_019812495.1ContigABCEOB000000000SAMN21040447
SPSE-20-VL-NY-NCR-0044
GCA_019812455.1ContigABCENZ000000000SAMN21040449
SPSE-20-VL-NY-NCR-0039
GCA_019812375.1ContigABCENW000000000SAMN21040435
SPSE-20-VL-NY-GA-0015
GCA_019812395.1ContigABCENV000000000SAMN21040443
SPSE-20-VL-NY-MS-0044
GCA_019812355.1ContigABCENS000000000SAMN21040442
SPSE-20-VL-NY-MS-0045
GCA_019812435.1ContigABCENT000000000SAMN21040437
SPSE-20-VL-NY-GA-0008
GCA_019812335.1ContigABCENR000000000SAMN21040418
SPSE-20-VL-NY-NCR-0021
GCA_019812315.1ContigABCENY000000000SAMN21040432
SPSE-20-VL-NY-GA-0019
GCA_019812295.1ContigABCENX000000000SAMN21040445
SPSE-20-VL-NY-MS-0039
GCA_019812275.1ContigABCENO000000000SAMN21040419
SPSE-20-VL-NY-NCR-0018
GCA_019812255.1ContigABCENU000000000SAMN21040433
SPSE-20-VL-NY-GA-0018
GCA_019812215.1ContigABCENP000000000SAMN21040438
SPSE-20-VL-NY-GA-0007
GCA_019812195.1ContigABCENQ000000000SAMN21040436
SPSE-20-VL-NY-GA-0009
GCA_019805765.1ContigABCELT000000000SAMN21040417
SPSE-20-VL-NY-NCR-0024
GCA_019805745.1ContigABCELX000000000SAMN21040422
SPSE-20-VL-NY-MS-0034
GCA_019805725.1ContigABCELW000000000SAMN21040425
SPSE-20-VL-NY-MS-0027
GCA_019808115.1ContigABCELK000000000SAMN21040440
SPSE-20-VL-NY-GA-0004
GCA_019808135.1ContigABCELL000000000SAMN21040430
SPSE-20-VL-NY-NCR-0026
GCA_019806615.1ContigABCENL000000000SAMN21040426
SPSE-20-VL-NY-NCR-0036
GCA_019806595.1ContigABCENN000000000SAMN21040439
SPSE-20-VL-NY-GA-0006
GCA_019806575.1ContigABCENF000000000SAMN21040427
SPSE-20-VL-NY-NCR-0033
GCA_019806535.1ContigABCENH000000000SAMN21040421
SPSE-20-VL-NY-NCR-0013
GCA_019806555.1ContigABCENM000000000SAMN21040428
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GCA_015632365.1ContigAAXKEK000000000SAMN15747857
SPSE-19-VL-NY-FL-0045
SRA Data Details
ParameterValue
Data volume, Gbases129
Data volume, Mbytes62783

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