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Accession: PRJNA258403 ID: 258403

Cronobacter

Cronobacter GenomeTrakr Project: FDA-CFSAN

Whole genome sequencing of cultured Cronobacter species as part of the FDA's Center for Food Safety and Applied Nutrition (CFSAN) surveillance project for rapid detection of foodborne illness outbreaks.
AccessionPRJNA258403
Data TypeGenome sequencing and assembly
ScopeMultispecies
Publications (total 9)
  • Jang H et al., "Whole-Genome Sequences of Cronobacter sakazakii Isolates Obtained from Foods of Plant Origin and Dried-Food Manufacturing Environments.", Genome Announc, 2018 Apr 12;6(15)
More...
SubmissionRegistration date: 21-Apr-2015
FDA/CFSAN
Related Resources
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)20931
WGS master1729
Genomic DNA158
SRA Experiments1695
Protein Sequences956660
Publications
PubMed9
PMC9
Other datasets
BioSample2042
Assembly1731
Assembly details:
Assembly levelNumber of Assemblies
2
58
1671
1731
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_029228395.1ContigABLAMJ000000000
SAMN33772888
CFSAN129930
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SAMN35038570
MOD1-CR1521
GCA_030126365.1ContigJASKFN000000000
SAMN35038568
MOD1-CR1504
GCA_030012155.1ContigJASDAB000000000
SAMN34997881
MOD1-E798
GCA_030012135.1ContigJASDAA000000000
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MOD1-E799
GCA_030011995.1ContigJASCZZ000000000
SAMN34997883
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GCA_030011965.1ContigJASDAH000000000
SAMN34997875
MOD1-E465
GCA_030025485.1ScaffoldJASEOP000000000
SAMN34999916
MOD1-3-27
GCA_030025765.1ScaffoldJASEOZ000000000
SAMN34999911
MOD1-Sun1
GCA_030025595.1ContigJASEOS000000000
SAMN34999914
MOD1-2-14
GCA_030025445.1ScaffoldJASEOI000000000
SAMN34999928
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SAMN31997670
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LMG 23825
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LMG 23824
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LMG 23823
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CFSAN133866
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CFSAN134826
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CFSAN134955
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GCA_044734285.1ContigABWHJE000000000
SAMN40375096
CFSAN136237
GCA_044734245.1ContigABWHJB000000000
SAMN40375184
CFSAN136249
GCA_044734145.1ContigABWHIV000000000
SAMN40530113
CFSAN130611
GCA_044734025.1ContigABWHIW000000000
SAMN40530108
CFSAN130610
GCA_044703345.1ContigABWGXU000000000
SAMN44521620
CFSAN139874
GCA_044703265.1ContigABWGXT000000000
SAMN44521625
CFSAN139868
GCA_044703285.1ContigABWGXQ000000000
SAMN44535670
CFSAN139909
GCA_044703125.1ContigABWGXP000000000
SAMN44535669
CFSAN139900
GCA_044703065.1ContigABWGXI000000000
SAMN44535671
CFSAN139905
GCA_044703325.1ContigABWGXV000000000
SAMN44521622
CFSAN139867
GCA_044703305.1ContigABWGXX000000000
SAMN44521621
CFSAN139872
GCA_044709855.1ContigABWGZF000000000
SAMN44345049
CFSAN139824
GCA_044710435.1ContigABWHAI000000000
SAMN43827177
CFSAN138923
GCA_044710535.1ContigABWHAM000000000
SAMN43827152
CFSAN138926
GCA_044710715.1ContigABWHAW000000000
SAMN43826817
CFSAN138918
GCA_044711615.1ContigABWHCR000000000
SAMN41895091
CFSAN137613
GCA_044711075.1ContigABWHBJ000000000
SAMN43380714
CFSAN138554
GCA_044711195.1ContigABWHBS000000000
SAMN43081783
CFSAN138198
GCA_016086895.1ContigAAXWFD000000000
SAMN03135635
CFSAN022292
GCA_016086315.1ContigAAXWFN000000000
SAMN03135636
CFSAN022293
GCA_007845795.1ContigVOEL00000000
SAMN12391532
MOD1_Md1sN
GCA_001999505.1ContigMRZS00000000
SAMN06100262
MOD1-Sh41g
GCA_001922905.1ContigMSAG00000000
SAMN06100261
MOD1-Sh41s
GCA_030026745.1ScaffoldJASEQZ000000000
SAMN34999857
MOD1-CQ7
GCA_033940045.1ContigABPDIM000000000
SAMN38372251
CFSAN135011
GCA_033941205.1ContigABPDKU000000000
SAMN38372184
CFSAN134941
GCA_033962495.1ContigABPEHT000000000
SAMN38447740
CFSAN134960
GCA_033972325.1ContigABPETP000000000
SAMN38447957
CFSAN135200
GCA_000409325.1ContigAJKW00000000
SAMN02952930
NCTC 9529
GCA_030165245.1ContigJASNFP000000000
SAMN35038508
MOD1-CQ119
GCA_000486025.1ContigAXDM00000000
SAMN02319257
z610
GCA_000485925.1ContigAVPP00000000
SAMN02319256
z508
SRA Data Details
ParameterValue
Data volume, Gbases664
Data volume, Tbytes0.38

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