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Accession: PRJNA258403 ID: 258403

Cronobacter

Cronobacter GenomeTrakr Project: FDA-CFSAN

Whole genome sequencing of cultured Cronobacter species as part of the FDA's Center for Food Safety and Applied Nutrition (CFSAN) surveillance project for rapid detection of foodborne illness outbreaks.
AccessionPRJNA258403
Data TypeGenome sequencing and assembly
ScopeMultispecies
Publications (total 9)
  • Jang H et al., "Whole-Genome Sequences of Cronobacter sakazakii Isolates Obtained from Foods of Plant Origin and Dried-Food Manufacturing Environments.", Genome Announc, 2018 Apr 12;6(15)
More...
SubmissionRegistration date: 21-Apr-2015
FDA/CFSAN
Related Resources
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)20933
WGS master1729
Genomic DNA158
SRA Experiments1695
Protein Sequences956660
Publications
PubMed9
PMC9
Other datasets
BioSample2042
Assembly1731
Assembly details:
Assembly levelNumber of Assemblies
2
58
1670
1730
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_016076555.1ContigAAXVRT000000000
SAMN09426159
MOD1_5960-70
GCA_016076875.1ContigAAXVRZ000000000
SAMN09426154
MOD1_0743-75
GCA_016087195.1ContigAAXWFA000000000
SAMN03135638
CFSAN022295
GCA_016087255.1ContigAAXWEX000000000
SAMN03135648
CFSAN022305
GCA_016087115.1ContigAAXWEZ000000000
SAMN03135644
CFSAN022301
GCA_016087035.1ContigAAXWFU000000000
SAMN03135651
CFSAN022308
GCA_016087015.1ContigAAXWFS000000000
SAMN03135645
CFSAN022302
GCA_016086975.1ContigAAXWFG000000000
SAMN03135643
CFSAN022300
GCA_016086875.1ContigAAXWFE000000000
SAMN03135637
CFSAN022294
GCA_016086855.1ContigAAXWFH000000000
SAMN03135640
CFSAN022297
GCA_016085915.1ContigAAXWFL000000000
SAMN03135650
CFSAN022307
GCA_016086335.1ContigAAXWFK000000000
SAMN03135639
CFSAN022296
GCA_016086045.1ContigAAXWFW000000000
SAMN03135649
CFSAN022306
GCA_016086035.1ContigAAXWFV000000000
SAMN03135647
CFSAN022304
GCA_016085995.1ContigAAXWFO000000000
SAMN03135652
CFSAN022309
GCA_016086255.1ContigAAXWFM000000000
SAMN03135646
CFSAN022303
GCA_034408785.1ContigABPLUI000000000
SAMN38447816
CFSAN135220
GCA_033897405.1ContigABPDBV000000000
SAMN38367968
CFSAN135118
GCA_033897625.1ContigABPDCB000000000
SAMN38366968
CFSAN134854
GCA_033897305.1ContigABPDBQ000000000
SAMN38368944
CFSAN134835
GCA_033898045.1ContigABPDCW000000000
SAMN38369640
CFSAN135065
GCA_033898165.1ContigABPDDC000000000
SAMN38369585
CFSAN135015
GCA_033962475.1ContigABPEHM000000000
SAMN38447737
CFSAN134958
GCA_033960505.1ContigABPEDW000000000
SAMN38447869
CFSAN135080
GCA_033960385.1ContigABPEDQ000000000
SAMN38447905
CFSAN135132
GCA_033942095.1ContigABPDMK000000000
SAMN38371721
CFSAN135131
GCA_033942085.1ContigABPDML000000000
SAMN38371718
CFSAN134884
GCA_033942165.1ContigABPDMO000000000
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CFSAN135130
GCA_033943705.1ContigABPDPN000000000
SAMN38370300
CFSAN134897
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CFSAN134972
GCA_033944145.1ContigABPDQL000000000
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CFSAN135089
GCA_033944645.1ContigABPDRI000000000
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CFSAN134974
GCA_033944565.1ContigABPDRF000000000
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GCA_033941245.1ContigABPDKP000000000
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GCA_034257795.1ContigABPJCM000000000
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CFSAN135601
GCA_032855805.1ContigABOCIH000000000
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GCA_032856145.1ContigABOCIZ000000000
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CFSAN133844
GCA_032855965.1ContigABOCIQ000000000
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CFSAN133872
GCA_032855605.1ContigABOCHY000000000
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GCA_032855705.1ContigABOCID000000000
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CFSAN133886
GCA_032856245.1ContigABOCJE000000000
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CFSAN133848
GCA_030736455.1ContigABLQBW000000000
SAMN36984030
CFSAN133265
GCA_030736435.1ContigABLQBT000000000
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CFSAN133250
GCA_030736055.1ContigABLQBF000000000
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CFSAN133260
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CFSAN133213
GCA_045970235.1ContigABWQWI000000000
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SAMN43898604
CFSAN139179
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GCA_000409225.1ContigAJKZ00000000
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LMG 23823
GCA_000409365.1ContigAJKY00000000
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LMG 23824
GCA_000409345.1ContigAJKX00000000
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GCA_029228395.1ContigABLAMJ000000000
SAMN33772888
CFSAN129930
GCA_030126425.1ContigJASKFQ000000000
SAMN35038572
MOD1-CR1541
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MOD1-CR1521
GCA_030126365.1ContigJASKFN000000000
SAMN35038568
MOD1-CR1504
GCA_030012155.1ContigJASDAB000000000
SAMN34997881
MOD1-E798
GCA_030012135.1ContigJASDAA000000000
SAMN34997882
MOD1-E799
GCA_030011995.1ContigJASCZZ000000000
SAMN34997883
MOD1-E791
GCA_030011965.1ContigJASDAH000000000
SAMN34997875
MOD1-E465
GCA_030025765.1ScaffoldJASEOZ000000000
SAMN34999911
MOD1-Sun1
GCA_030025595.1ContigJASEOS000000000
SAMN34999914
MOD1-2-14
GCA_030025445.1ScaffoldJASEOI000000000
SAMN34999928
MOD1-KW5
GCA_030025425.1ContigJASEON000000000
SAMN34999918
MOD1-6-15G
GCA_030025485.1ScaffoldJASEOP000000000
SAMN34999916
MOD1-3-27
GCA_030023585.1ScaffoldJASEOO000000000
SAMN34999917
MOD1-6-3G
GCA_030023505.1ContigJASENJ000000000
SAMN34999868
MOD1-E187
GCA_028638895.1ContigABKQLD000000000
SAMN33285600
CFSAN129437
GCA_026609995.2ContigABJQNI000000000
SAMN31997670
FDA1207441-S001-001
GCA_028154205.1ContigABKINU000000000
SAMN32898213
CFSAN129044
GCA_028171845.1ContigABKIYH000000000
SAMN32912920
CFSAN129066
GCA_028216275.1ContigABKJWJ000000000
SAMN32942870
CFSAN129394
GCA_016076615.1ContigAAXVRK000000000
SAMN09426146
MOD1_E868
GCA_016076695.1ContigAAXVRO000000000
SAMN09426149
MOD1_0939A-75
GCA_016076405.1ContigAAXVRG000000000
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SAMN09426153
MOD1_E615
GCA_016077135.1ContigAAXVSJ000000000
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GCA_016077195.1ContigAAXVSF000000000
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MOD1-E833
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MOD1-E831
GCA_016077335.1ContigAAXVSZ000000000
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MOD1_E608
GCA_016077355.1ContigAAXVSW000000000
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MOD1_E618
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MOD1_1895-73
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MOD1-E532
GCA_016076375.1ContigAAXVRD000000000
SAMN09426143
MOD1_E754
GCA_030736515.1ContigABLQCA000000000
SAMN36984027
CFSAN133219
GCA_032856285.1ContigABOCJF000000000
SAMN37871935
CFSAN133893
GCA_032855285.1ContigABOCHJ000000000
SAMN37872241
CFSAN133866
GCA_032854945.1ContigABOCGR000000000
SAMN37872300
CFSAN133871
GCA_034264435.1ContigABPJMM000000000
SAMN38726041
CFSAN135602
GCA_033940385.1ContigABPDJC000000000
SAMN38372226
CFSAN134886
GCA_033945045.1ContigABPDSD000000000
SAMN38369805
CFSAN134832
GCA_033944965.1ContigABPDRW000000000
SAMN38369807
CFSAN134882
GCA_033944535.1ContigABPDRD000000000
SAMN38369955
CFSAN134952
GCA_033944425.1ContigABPDQZ000000000
SAMN38369957
CFSAN134951
GCA_033942125.1ContigABPDMN000000000
SAMN38371722
CFSAN134818
GCA_033942945.1ContigABPDNW000000000
SAMN38370621
CFSAN135060
GCA_033946905.1ContigABPDTW000000000
SAMN38369420
CFSAN135106
GCA_033946945.1ContigABPDTX000000000
SAMN38369416
CFSAN135107
GCA_033961225.1ContigABPEFF000000000
SAMN38447808
CFSAN134826
GCA_033960725.1ContigABPEEJ000000000
SAMN38447861
CFSAN135214
GCA_033962535.1ContigABPEHS000000000
SAMN38447732
CFSAN134916
GCA_033962675.1ContigABPEHV000000000
SAMN38447712
CFSAN134955
GCA_033962655.1ContigABPEHW000000000
SAMN38447713
CFSAN134956
GCA_033963245.1ContigABPEIO000000000
SAMN38447678
CFSAN134954
GCA_033963075.1ContigABPEII000000000
SAMN38447677
CFSAN134953
GCA_033963765.1ContigABPEJK000000000
SAMN38447609
CFSAN134919
GCA_033963485.1ContigABPEIX000000000
SAMN38447654
CFSAN134920
GCA_033961125.1ContigABPEFH000000000
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CFSAN135006
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SAMN38368946
CFSAN134979
GCA_033896265.1ContigABPCZJ000000000
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CFSAN135114
GCA_033897445.1ContigABPDBW000000000
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CFSAN135025
GCA_034408585.1ContigABPLUF000000000
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CFSAN134810
GCA_044732285.1ContigABWHFK000000000
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GCA_044733945.1ContigABWHIY000000000
SAMN40375186
CFSAN136240
GCA_044710895.1ContigABWHBE000000000
SAMN43388998
CFSAN138564
GCA_001922825.1ContigMSAD00000000
SAMN04329653
MOD1-Md27g
GCA_001922805.1ContigMSAC00000000
SAMN04329586
MOD1-Md25g
GCA_001922875.1ContigMSAF00000000
SAMN06100263
MOD1-Md99g
GCA_030026805.1ContigJASERE000000000
SAMN34999851
MOD1-Jor168B
GCA_030026485.1ContigJASEQI000000000
SAMN34999876
MOD1-E633
GCA_030026815.1ContigJASERF000000000
SAMN34999850
MOD1-E265
GCA_030055375.1ContigJASHKK000000000
SAMN14669738
MOD1_GK1349
GCA_030055315.1ContigJASHKH000000000
SAMN14669744
MOD1_GK1512
GCA_030011955.1ContigJASCZY000000000
SAMN34997884
MOD1-E829
GCA_030012075.1ContigJASDAI000000000
SAMN34997874
MOD1-E684
GCA_030012085.1ContigJASDAG000000000
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MOD1-E766
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MOD1-CQ62
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MOD1-CR959S
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CFSAN129929
GCA_015350615.1ContigJADKRI000000000
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MOD1_GK962
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MOD1_GK1355
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MOD1_GK1354
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MOD1_GK1356
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MOD1_GK1358
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GCA_028574095.1ContigABKOIW000000000
SAMN33227561
CFSAN129399
GCA_028574075.1ContigABKOIY000000000
SAMN33227563
CFSAN129391
GCA_028574975.1ContigABKOKI000000000
SAMN33227556
CFSAN129040
GCA_028573635.1ContigABKOHY000000000
SAMN33227564
CFSAN129390
GCA_028573645.1ContigABKOHW000000000
SAMN33227568
CFSAN129395
GCA_030126595.1ContigJASKFZ000000000
SAMN35038554
MOD1-CR505
GCA_030126565.1ContigJASKFX000000000
SAMN35038549
MOD1-CR447
GCA_030126545.1ContigJASKFS000000000
SAMN35038543
MOD1-CR268
GCA_030126525.1ContigJASKFV000000000
SAMN35038546
MOD1-CR342
GCA_030126485.1ContigJASKFU000000000
SAMN35038545
MOD1-CR318
GCA_030126465.1ContigJASKFT000000000
SAMN35038544
MOD1-CR316
GCA_030126125.1ContigJASKFB000000000
SAMN35038506
MOD1-CQ4
GCA_030126325.1ContigJASKFO000000000
SAMN35038569
MOD1-CR1516
GCA_030126305.1ContigJASKFM000000000
SAMN35038567
MOD1-CR1503
GCA_030026565.1ContigJASERB000000000
SAMN34999854
MOD1-E752
GCA_030025495.1ScaffoldJASEOU000000000
SAMN34999913
MOD1-3-24
GCA_030025585.1ContigJASEOV000000000
SAMN34999912
MOD1-5-15G
GCA_030025545.1ContigJASEOR000000000
SAMN34999915
MOD1-2-15
GCA_030012035.1ContigJASDAC000000000
SAMN34997880
MOD1-E694
GCA_030012055.1ContigJASDAE000000000
SAMN34997878
MOD1-E626
GCA_030012105.1ContigJASDAF000000000
SAMN34997877
MOD1-E866
GCA_030012185.1ContigJASCZX000000000
SAMN34997885
MOD1-E933
GCA_033962495.1ContigABPEHT000000000
SAMN38447740
CFSAN134960
GCA_033940045.1ContigABPDIM000000000
SAMN38372251
CFSAN135011
GCA_033941205.1ContigABPDKU000000000
SAMN38372184
CFSAN134941
GCA_033972325.1ContigABPETP000000000
SAMN38447957
CFSAN135200
GCA_000409325.1ContigAJKW00000000
SAMN02952930
NCTC 9529
GCA_030026745.1ScaffoldJASEQZ000000000
SAMN34999857
MOD1-CQ7
GCA_030165245.1ContigJASNFP000000000
SAMN35038508
MOD1-CQ119
GCA_000486025.1ContigAXDM00000000
SAMN02319257
z610
GCA_000485925.1ContigAVPP00000000
SAMN02319256
z508
SRA Data Details
ParameterValue
Data volume, Gbases664
Data volume, Tbytes0.38

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