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Accession: PRJNA258403 ID: 258403

Cronobacter

Cronobacter GenomeTrakr Project: FDA-CFSAN

Whole genome sequencing of cultured Cronobacter species as part of the FDA's Center for Food Safety and Applied Nutrition (CFSAN) surveillance project for rapid detection of foodborne illness outbreaks.
AccessionPRJNA258403
Data TypeGenome sequencing and assembly
ScopeMultispecies
Publications (total 9)
  • Jang H et al., "Whole-Genome Sequences of Cronobacter sakazakii Isolates Obtained from Foods of Plant Origin and Dried-Food Manufacturing Environments.", Genome Announc, 2018 Apr 12;6(15)
More...
SubmissionRegistration date: 21-Apr-2015
FDA/CFSAN
Related Resources
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)20931
WGS master1729
Genomic DNA158
SRA Experiments1695
Protein Sequences956660
Publications
PubMed9
PMC9
Other datasets
BioSample2042
Assembly1731
Assembly details:
Assembly levelNumber of Assemblies
2
58
1671
1731
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_034408785.1ContigABPLUI000000000
SAMN38447816
CFSAN135220
GCA_033962475.1ContigABPEHM000000000
SAMN38447737
CFSAN134958
GCA_033960385.1ContigABPEDQ000000000
SAMN38447905
CFSAN135132
GCA_033960505.1ContigABPEDW000000000
SAMN38447869
CFSAN135080
GCA_033944645.1ContigABPDRI000000000
SAMN38369897
CFSAN134974
GCA_033944565.1ContigABPDRF000000000
SAMN38369929
CFSAN135066
GCA_033944185.1ContigABPDQJ000000000
SAMN38370121
CFSAN134972
GCA_033944145.1ContigABPDQL000000000
SAMN38370102
CFSAN135089
GCA_033898165.1ContigABPDDC000000000
SAMN38369585
CFSAN135015
GCA_033898045.1ContigABPDCW000000000
SAMN38369640
CFSAN135065
GCA_033897625.1ContigABPDCB000000000
SAMN38366968
CFSAN134854
GCA_033897305.1ContigABPDBQ000000000
SAMN38368944
CFSAN134835
GCA_033897405.1ContigABPDBV000000000
SAMN38367968
CFSAN135118
GCA_033941245.1ContigABPDKP000000000
SAMN38372182
CFSAN134889
GCA_033942165.1ContigABPDMO000000000
SAMN38371720
CFSAN135130
GCA_033942095.1ContigABPDMK000000000
SAMN38371721
CFSAN135131
GCA_033942085.1ContigABPDML000000000
SAMN38371718
CFSAN134884
GCA_033943705.1ContigABPDPN000000000
SAMN38370300
CFSAN134897
GCA_034257795.1ContigABPJCM000000000
SAMN38726040
CFSAN135601
GCA_032855805.1ContigABOCIH000000000
SAMN37872064
CFSAN133885
GCA_032855965.1ContigABOCIQ000000000
SAMN37872037
CFSAN133859
GCA_032856145.1ContigABOCIZ000000000
SAMN37872020
CFSAN133844
GCA_032854905.1ContigABOCGP000000000
SAMN37872308
CFSAN133872
GCA_032855605.1ContigABOCHY000000000
SAMN37872176
CFSAN133890
GCA_032855705.1ContigABOCID000000000
SAMN37872054
CFSAN133886
GCA_032856245.1ContigABOCJE000000000
SAMN37872027
CFSAN133848
GCA_030736055.1ContigABLQBF000000000
SAMN36984276
CFSAN133260
GCA_030735835.1ContigABLQAO000000000
SAMN36984290
CFSAN133213
GCA_030736455.1ContigABLQBW000000000
SAMN36984030
CFSAN133265
GCA_030736435.1ContigABLQBT000000000
SAMN36984029
CFSAN133250
GCA_000409225.1ContigAJKZ00000000
SAMN02952933
LMG 23823
GCA_000409345.1ContigAJKX00000000
SAMN02952931
LMG 23825
GCA_000409365.1ContigAJKY00000000
SAMN02952932
LMG 23824
GCA_029228395.1ContigABLAMJ000000000
SAMN33772888
CFSAN129930
GCA_030025765.1ScaffoldJASEOZ000000000
SAMN34999911
MOD1-Sun1
GCA_030025595.1ContigJASEOS000000000
SAMN34999914
MOD1-2-14
GCA_030025485.1ScaffoldJASEOP000000000
SAMN34999916
MOD1-3-27
GCA_030025445.1ScaffoldJASEOI000000000
SAMN34999928
MOD1-KW5
GCA_030025425.1ContigJASEON000000000
SAMN34999918
MOD1-6-15G
GCA_030023585.1ScaffoldJASEOO000000000
SAMN34999917
MOD1-6-3G
GCA_030023505.1ContigJASENJ000000000
SAMN34999868
MOD1-E187
GCA_030011965.1ContigJASDAH000000000
SAMN34997875
MOD1-E465
GCA_030011995.1ContigJASCZZ000000000
SAMN34997883
MOD1-E791
GCA_030012155.1ContigJASDAB000000000
SAMN34997881
MOD1-E798
GCA_030012135.1ContigJASDAA000000000
SAMN34997882
MOD1-E799
GCA_030126425.1ContigJASKFQ000000000
SAMN35038572
MOD1-CR1541
GCA_030126405.1ContigJASKFJ000000000
SAMN35038563
MOD1-CR1148
GCA_030126385.1ContigJASKFP000000000
SAMN35038570
MOD1-CR1521
GCA_030126365.1ContigJASKFN000000000
SAMN35038568
MOD1-CR1504
GCA_028154205.1ContigABKINU000000000
SAMN32898213
CFSAN129044
GCA_028171845.1ContigABKIYH000000000
SAMN32912920
CFSAN129066
GCA_028216275.1ContigABKJWJ000000000
SAMN32942870
CFSAN129394
GCA_026609995.2ContigABJQNI000000000
SAMN31997670
FDA1207441-S001-001
GCA_028638895.1ContigABKQLD000000000
SAMN33285600
CFSAN129437
GCA_016087195.1ContigAAXWFA000000000
SAMN03135638
CFSAN022295
GCA_016087255.1ContigAAXWEX000000000
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CFSAN022305
GCA_016087115.1ContigAAXWEZ000000000
SAMN03135644
CFSAN022301
GCA_016086045.1ContigAAXWFW000000000
SAMN03135649
CFSAN022306
GCA_016086035.1ContigAAXWFV000000000
SAMN03135647
CFSAN022304
GCA_016085995.1ContigAAXWFO000000000
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CFSAN022309
GCA_016086255.1ContigAAXWFM000000000
SAMN03135646
CFSAN022303
GCA_016086335.1ContigAAXWFK000000000
SAMN03135639
CFSAN022296
GCA_016087035.1ContigAAXWFU000000000
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CFSAN022308
GCA_016087015.1ContigAAXWFS000000000
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CFSAN022302
GCA_016086975.1ContigAAXWFG000000000
SAMN03135643
CFSAN022300
GCA_016086875.1ContigAAXWFE000000000
SAMN03135637
CFSAN022294
GCA_016086855.1ContigAAXWFH000000000
SAMN03135640
CFSAN022297
GCA_016085915.1ContigAAXWFL000000000
SAMN03135650
CFSAN022307
GCA_016076875.1ContigAAXVRZ000000000
SAMN09426154
MOD1_0743-75
GCA_016076555.1ContigAAXVRT000000000
SAMN09426159
MOD1_5960-70
GCA_045970255.1ContigABWQWH000000000
SAMN45443338
CFSAN140820
GCA_045970235.1ContigABWQWI000000000
SAMN45445163
CFSAN140817
GCA_044863125.1ContigABWIZK000000000
SAMN44699036
CFSAN140052
GCA_044736085.1ContigABWHMQ000000000
SAMN39746481
CFSAN135985
GCA_044709875.1ContigABWGZG000000000
SAMN44345048
CFSAN139825
GCA_044710195.1ContigABWGZY000000000
SAMN43898604
CFSAN139179
GCA_044703545.1ContigABWGYF000000000
SAMN44509249
CFSAN139879
GCA_044703525.1ContigABWGYK000000000
SAMN44509258
CFSAN139865
GCA_044710875.1ContigABWHBD000000000
SAMN43388995
CFSAN138568
GCA_044710975.1ContigABWHBI000000000
SAMN43380562
CFSAN138556
GCA_044711675.1ContigABWHCP000000000
SAMN41895149
CFSAN137616
GCA_044734445.1ContigABWHJN000000000
SAMN40375092
CFSAN136333
GCA_044734505.1ContigABWHJO000000000
SAMN40375162
CFSAN136247
GCA_044734345.1ContigABWHJI000000000
SAMN40375183
CFSAN136239
GCA_044734365.1ContigABWHJJ000000000
SAMN40375103
CFSAN136244
GCA_044735485.1ContigABWHLL000000000
SAMN39746598
CFSAN135945
GCA_044735525.1ContigABWHLQ000000000
SAMN39746605
CFSAN135937
GCA_044734845.1ContigABWHKH000000000
SAMN40036493
CFSAN136277
GCA_044734265.1ContigABWHJG000000000
SAMN40375100
CFSAN136263
GCA_044734225.1ContigABWHIZ000000000
SAMN40375101
CFSAN136246
GCA_044734205.1ContigABWHJC000000000
SAMN40375102
CFSAN136238
GCA_044734045.1ContigABWHJD000000000
SAMN40375185
CFSAN136241
GCA_030736515.1ContigABLQCA000000000
SAMN36984027
CFSAN133219
GCA_032855285.1ContigABOCHJ000000000
SAMN37872241
CFSAN133866
GCA_032856285.1ContigABOCJF000000000
SAMN37871935
CFSAN133893
GCA_032854945.1ContigABOCGR000000000
SAMN37872300
CFSAN133871
GCA_033942945.1ContigABPDNW000000000
SAMN38370621
CFSAN135060
GCA_033942125.1ContigABPDMN000000000
SAMN38371722
CFSAN134818
GCA_033940385.1ContigABPDJC000000000
SAMN38372226
CFSAN134886
GCA_033945045.1ContigABPDSD000000000
SAMN38369805
CFSAN134832
GCA_033944965.1ContigABPDRW000000000
SAMN38369807
CFSAN134882
GCA_033896705.1ContigABPDAK000000000
SAMN38368946
CFSAN134979
GCA_033944535.1ContigABPDRD000000000
SAMN38369955
CFSAN134952
GCA_033944425.1ContigABPDQZ000000000
SAMN38369957
CFSAN134951
GCA_033946945.1ContigABPDTX000000000
SAMN38369416
CFSAN135107
GCA_033946905.1ContigABPDTW000000000
SAMN38369420
CFSAN135106
GCA_033961225.1ContigABPEFF000000000
SAMN38447808
CFSAN134826
GCA_033961125.1ContigABPEFH000000000
SAMN38447828
CFSAN135006
GCA_033960725.1ContigABPEEJ000000000
SAMN38447861
CFSAN135214
GCA_033962535.1ContigABPEHS000000000
SAMN38447732
CFSAN134916
GCA_033963765.1ContigABPEJK000000000
SAMN38447609
CFSAN134919
GCA_033963485.1ContigABPEIX000000000
SAMN38447654
CFSAN134920
GCA_033963245.1ContigABPEIO000000000
SAMN38447678
CFSAN134954
GCA_033963075.1ContigABPEII000000000
SAMN38447677
CFSAN134953
GCA_033962675.1ContigABPEHV000000000
SAMN38447712
CFSAN134955
GCA_033962655.1ContigABPEHW000000000
SAMN38447713
CFSAN134956
GCA_033896265.1ContigABPCZJ000000000
SAMN38366962
CFSAN135114
GCA_033897445.1ContigABPDBW000000000
SAMN38368009
CFSAN135025
GCA_034408585.1ContigABPLUF000000000
SAMN38447823
CFSAN134810
GCA_034264435.1ContigABPJMM000000000
SAMN38726041
CFSAN135602
GCA_000409305.1ContigAJKV00000000
SAMN02952929
LMG 23826
GCA_001922875.1ContigMSAF00000000
SAMN06100263
MOD1-Md99g
GCA_001922825.1ContigMSAD00000000
SAMN04329653
MOD1-Md27g
GCA_001922805.1ContigMSAC00000000
SAMN04329586
MOD1-Md25g
GCA_030126265.1ScaffoldJASKFH000000000
SAMN35038501
MOD1-CQ62
GCA_030126845.1ContigJASKGF000000000
SAMN35038562
MOD1-CR959S
GCA_030126825.1ContigJASKGL000000000
SAMN35038502
MOD1-Jor160B
GCA_030126685.1ContigJASKGE000000000
SAMN35038561
MOD1-CR959R
GCA_030127265.1ContigJASKNG000000000
SAMN35038521
MOD1-CQ41
GCA_030012085.1ContigJASDAG000000000
SAMN34997876
MOD1-E766
GCA_030011955.1ContigJASCZY000000000
SAMN34997884
MOD1-E829
GCA_030012075.1ContigJASDAI000000000
SAMN34997874
MOD1-E684
GCA_030026485.1ContigJASEQI000000000
SAMN34999876
MOD1-E633
GCA_030026805.1ContigJASERE000000000
SAMN34999851
MOD1-Jor168B
GCA_030026815.1ContigJASERF000000000
SAMN34999850
MOD1-E265
GCA_030055375.1ContigJASHKK000000000
SAMN14669738
MOD1_GK1349
GCA_030055315.1ContigJASHKH000000000
SAMN14669744
MOD1_GK1512
GCA_029224145.1ContigABLALN000000000
SAMN33772889
CFSAN129929
GCA_016076405.1ContigAAXVRG000000000
SAMN09426145
MOD1_E765
GCA_016076495.1ContigAAXVRE000000000
SAMN09426144
MOD1_E763
GCA_016076375.1ContigAAXVRD000000000
SAMN09426143
MOD1_E754
GCA_016076615.1ContigAAXVRK000000000
SAMN09426146
MOD1_E868
GCA_016076695.1ContigAAXVRO000000000
SAMN09426149
MOD1_0939A-75
GCA_016076975.1ContigAAXVSB000000000
SAMN04329587
MOD1-E902
GCA_016076835.1ContigAAXVRX000000000
SAMN09426153
MOD1_E615
GCA_016077335.1ContigAAXVSZ000000000
SAMN09426140
MOD1_E608
GCA_016077355.1ContigAAXVSW000000000
SAMN09426141
MOD1_E618
GCA_016077535.1ContigAAXVST000000000
SAMN09426150
MOD1_1895-73
GCA_016077245.1ContigAAXVSR000000000
SAMN04329580
MOD1-E532
GCA_016077135.1ContigAAXVSJ000000000
SAMN09426148
MOD1_2153
GCA_016077195.1ContigAAXVSF000000000
SAMN04329582
MOD1-E833
GCA_016077015.1ContigAAXVSH000000000
SAMN09426147
MOD1_2149
GCA_016077465.1ContigAAXVTA000000000
SAMN04329581
MOD1-E831
GCA_044732285.1ContigABWHFK000000000
SAMN40982398
CFSAN136654
GCA_044733945.1ContigABWHIY000000000
SAMN40375186
CFSAN136240
GCA_044710895.1ContigABWHBE000000000
SAMN43388998
CFSAN138564
GCA_015350615.1ContigJADKRI000000000
SAMN14669707
MOD1_GK1518
GCA_015353245.1ContigJADKOA000000000
SAMN14669709
MOD1_GK1510
GCA_015354035.1ContigJADKOK000000000
SAMN14669729
MOD1_GK962
GCA_015353775.1ContigJADKOR000000000
SAMN14669742
MOD1_GK1355
GCA_015353655.1ContigJADKOO000000000
SAMN14669749
MOD1_GK1354
GCA_015353545.1ContigJADKOG000000000
SAMN14669750
MOD1_GK1356
GCA_015353535.1ContigJADKNZ000000000
SAMN14669713
MOD1_GK1358
GCA_015353475.1ContigJADKOB000000000
SAMN14669741
MOD1_GK1360
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SAMN14669753
MOD1_GK1357
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SAMN14669756
MOD1_GK796
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SAMN38367004
CFSAN135173
GCA_033963425.1ContigABPEIV000000000
SAMN38447648
CFSAN134922
GCA_033962795.1ContigABPEIE000000000
SAMN38447649
CFSAN134923
GCA_033962455.1ContigABPEHN000000000
SAMN38447733
CFSAN134959
GCA_033945465.1ContigABPDSX000000000
SAMN38369586
CFSAN135016
GCA_033945125.1ContigABPDSG000000000
SAMN38369638
CFSAN134935
GCA_033944725.1ContigABPDRM000000000
SAMN38369898
CFSAN134918
GCA_033942255.1ContigABPDMU000000000
SAMN38371716
CFSAN135129
GCA_001922855.1ContigMSAE00000000
SAMN04329654
MOD1-Md1s
GCA_000409285.1ContigAJKU00000000
SAMN02952928
ATCC 51329
GCA_030012015.1ContigJASDAD000000000
SAMN34997879
MOD1-E888
GCA_029616845.1ContigABLKCO000000000
SAMN34104964
CFSAN129928
GCA_016076515.1ContigAAXVRR000000000
SAMN09426158
MOD1_3523-75
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SAMN40375094
CFSAN136250
GCA_008805515.1ContigWAGD00000000
SAMN12644501
MOD1_GK1257
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SAMN14669716
MOD1_GK1258
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SAMN38371708
CFSAN135190
GCA_033942405.1ContigABPDNB000000000
SAMN38371687
CFSAN135145
GCA_033943065.1ContigABPDOG000000000
SAMN38370387
CFSAN135059
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SAMN38371680
CFSAN135051
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SAMN38371681
CFSAN135140
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CFSAN135052
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CFSAN134885
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CFSAN134808
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CFSAN134939
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SAMN38370393
CFSAN134807
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CFSAN135136
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CFSAN134966
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SAMN38370620
CFSAN135139
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CFSAN135047
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CFSAN135046
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SAMN38370245
CFSAN134908
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SAMN38370255
CFSAN135085
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SAMN38369590
CFSAN135022
GCA_033943725.1ContigABPDPP000000000
SAMN38370298
CFSAN135053
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SAMN38370297
CFSAN135055
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SAMN38370317
CFSAN135045
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SAMN38370319
CFSAN135057
GCA_033943185.1ContigABPDOL000000000
SAMN38370383
CFSAN135141
GCA_033943165.1ContigABPDOM000000000
SAMN38370385
CFSAN135058
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SAMN38370320
CFSAN135143
GCA_033943125.1ContigABPDOK000000000
SAMN38370392
CFSAN134970
GCA_033943105.1ContigABPDOJ000000000
SAMN38370390
CFSAN134937
GCA_033941265.1ContigABPDKV000000000
SAMN38372176
CFSAN134820
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SAMN38372178
CFSAN134815
GCA_033941305.1ContigABPDKW000000000
SAMN38372174
CFSAN135039
GCA_033941085.1ContigABPDKH000000000
SAMN38372195
CFSAN134887
GCA_033940985.1ContigABPDKG000000000
SAMN38372201
CFSAN134948
GCA_033940945.1ContigABPDKA000000000
SAMN38372193
CFSAN135194
GCA_033940925.1ContigABPDKF000000000
SAMN38372199
CFSAN135040
GCA_033940905.1ContigABPDKE000000000
SAMN38372200
CFSAN135133
GCA_033940585.1ContigABPDJN000000000
SAMN38372218
CFSAN134892
GCA_033942145.1ContigABPDMM000000000
SAMN38371719
CFSAN135048
GCA_033942305.1ContigABPDMV000000000
SAMN38371710
CFSAN135189
GCA_033942285.1ContigABPDMT000000000
SAMN38371712
CFSAN135038
GCA_033941505.1ContigABPDLF000000000
SAMN38372146
CFSAN135036
GCA_033941485.1ContigABPDLI000000000
SAMN38372147
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SAMN39746591
CFSAN135942
GCA_044709855.1ContigABWGZF000000000
SAMN44345049
CFSAN139824
GCA_044710435.1ContigABWHAI000000000
SAMN43827177
CFSAN138923
GCA_044703065.1ContigABWGXI000000000
SAMN44535671
CFSAN139905
GCA_044703325.1ContigABWGXV000000000
SAMN44521622
CFSAN139867
GCA_044703305.1ContigABWGXX000000000
SAMN44521621
CFSAN139872
GCA_044711075.1ContigABWHBJ000000000
SAMN43380714
CFSAN138554
GCA_044710715.1ContigABWHAW000000000
SAMN43826817
CFSAN138918
GCA_044710535.1ContigABWHAM000000000
SAMN43827152
CFSAN138926
GCA_044711615.1ContigABWHCR000000000
SAMN41895091
CFSAN137613
GCA_044711195.1ContigABWHBS000000000
SAMN43081783
CFSAN138198
GCA_044734105.1ContigABWHIU000000000
SAMN40530199
CFSAN130609
GCA_044734405.1ContigABWHJL000000000
SAMN40375099
CFSAN136261
GCA_044734425.1ContigABWHJM000000000
SAMN40375182
CFSAN136242
GCA_044734315.1ContigABWHJF000000000
SAMN40375181
CFSAN136243
GCA_044734385.1ContigABWHJK000000000
SAMN40375098
CFSAN136264
GCA_044735325.1ContigABWHLE000000000
SAMN39746617
CFSAN135977
GCA_044735345.1ContigABWHLH000000000
SAMN39746608
CFSAN135973
GCA_044735005.1ContigABWHKP000000000
SAMN39746712
CFSAN135955
GCA_044734285.1ContigABWHJE000000000
SAMN40375096
CFSAN136237
GCA_044734025.1ContigABWHIW000000000
SAMN40530108
CFSAN130610
GCA_044734245.1ContigABWHJB000000000
SAMN40375184
CFSAN136249
GCA_044734145.1ContigABWHIV000000000
SAMN40530113
CFSAN130611
GCA_033941205.1ContigABPDKU000000000
SAMN38372184
CFSAN134941
GCA_033940045.1ContigABPDIM000000000
SAMN38372251
CFSAN135011
GCA_033962495.1ContigABPEHT000000000
SAMN38447740
CFSAN134960
GCA_033972325.1ContigABPETP000000000
SAMN38447957
CFSAN135200
GCA_000409325.1ContigAJKW00000000
SAMN02952930
NCTC 9529
GCA_030026745.1ScaffoldJASEQZ000000000
SAMN34999857
MOD1-CQ7
GCA_030165245.1ContigJASNFP000000000
SAMN35038508
MOD1-CQ119
GCA_000485925.1ContigAVPP00000000
SAMN02319256
z508
GCA_000486025.1ContigAXDM00000000
SAMN02319257
z610
SRA Data Details
ParameterValue
Data volume, Gbases664
Data volume, Tbytes0.38

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