Ensifer (ID 401434) - BioProject

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Accession: PRJNA401434 ID: 401434

Ensifer

Ensifer spp associated with Medicago whole genome sequencing

Whole genome Illumina (short read) genome sequencing of Ensifer rhizobia isolated from Medicago nodules. Strains are from the USDA collection.

Accession	PRJNA401434
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Ensifer[Taxonomy ID: 106591] Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer
Publications	Epstein B et al., "Genome-Wide Association Analyses in the Model Rhizobium Ensifer meliloti.", mSphere, 2018 Oct 24;3(5)
Grants	"Expanding the Medicago truncatula Hapmap as a Platform for Exploring the Genetics of Legume Symbioses" (Grant ID IOS-1237993, National Science Foundation (USA)) "Developing Resources For Association Mapping In Sinorhizobia Species" (Grant ID USDA-HATCH MIN-71-030 , National Institute of Food and Agriculture)
Submission	Registration date: 8-Jan-2019 University of Minneosta
Related Resources	Medicago truncatula Hapmap project website
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	40049
WGS master	171
SRA Experiments	188
Protein Sequences	1111716
Publications
PubMed	1
PMC	1
Other datasets
BioSample	188
Assembly	171

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

171
171

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_004017585.1	RPJI00000000	SAMN07640870	USDA1641	Sinorhizobium medicae
GCA_004017565.1	RPJJ00000000	SAMN07640869	USDA1638	Sinorhizobium medicae
GCA_004004695.1	RPNW00000000	SAMN07640929	3082	Sinorhizobium medicae
GCA_004002155.1	RPJB00000000	SAMN07640878	USDA1664	Sinorhizobium medicae
GCA_004002265.1	RPJP00000000	SAMN07640862	USDA1624	Sinorhizobium medicae
GCA_004002595.1	RPJK00000000	SAMN07640867	USDA1632	Sinorhizobium medicae
GCA_004002565.1	RPJH00000000	SAMN07640872	USDA1652	Sinorhizobium medicae
GCA_004002285.1	RPJM00000000	SAMN07640865	USDA1630	Sinorhizobium medicae
GCA_004002395.1	RPJY00000000	SAMN07640852	USDA1607	Sinorhizobium medicae
GCA_004002365.1	RPJW00000000	SAMN07640854	USDA1611	Sinorhizobium medicae
GCA_004002375.1	RPJX00000000	SAMN07640853	USDA1608	Sinorhizobium medicae
GCA_004002305.1	RPJN00000000	SAMN07640864	USDA1629	Sinorhizobium medicae
GCA_004002295.1	RPJL00000000	SAMN07640866	USDA1631	Sinorhizobium medicae
GCA_004001945.1	RPIT00000000	SAMN07640887	USDA1694	Sinorhizobium medicae
GCA_004004485.1	RPNU00000000	SAMN07640745	USDA1004	Sinorhizobium medicae
GCA_004004025.1	RPNE00000000	SAMN07640764	USDA1149	Sinorhizobium medicae
GCA_004004045.1	RPNH00000000	SAMN07640760	USDA1066	Sinorhizobium medicae
GCA_004004015.1	RPND00000000	SAMN07640765	USDA1150	Sinorhizobium medicae
GCA_004002725.1	RPJZ00000000	SAMN07640851	USDA1606	Sinorhizobium medicae
GCA_004003955.1	RPMY00000000	SAMN07640770	USDA1169	Sinorhizobium medicae
GCA_004003825.1	RPMP00000000	SAMN07640779	USDA1195	Sinorhizobium meliloti
GCA_004003835.1	RPMJ00000000	SAMN07640786	USDA1204	Sinorhizobium meliloti
GCA_004003855.1	RPMU00000000	SAMN07640774	USDA1183	Sinorhizobium meliloti
GCA_004003765.1	RPMK00000000	SAMN07640785	USDA1203	Sinorhizobium meliloti
GCA_004003745.1	RPMI00000000	SAMN07640787	USDA1205	Sinorhizobium meliloti
GCA_004003795.1	RPLJ00000000	SAMN07640812	USDA1336	Sinorhizobium meliloti
GCA_004003685.1	RPLU00000000	SAMN07640801	USDA1235	Sinorhizobium meliloti
GCA_004003725.1	RPMC00000000	SAMN07640793	USDA1214	Sinorhizobium meliloti
GCA_004003675.1	RPLV00000000	SAMN07640800	USDA1232	Sinorhizobium meliloti
GCA_004003705.1	RPMB00000000	SAMN07640794	USDA1215	Sinorhizobium meliloti
GCA_004003615.1	RPLM00000000	SAMN07640809	USDA1320	Sinorhizobium meliloti
GCA_004003645.1	RPLP00000000	SAMN07640806	USDA1289	Sinorhizobium meliloti
GCA_004003595.1	RPMN00000000	SAMN07640781	USDA1199	Sinorhizobium meliloti
GCA_004003605.1	RPLA00000000	SAMN07640822	USDA1463	Sinorhizobium meliloti
GCA_004003495.1	RPME00000000	SAMN07640791	USDA1211	Sinorhizobium meliloti
GCA_004003505.1	RPMG00000000	SAMN07640789	USDA1208	Sinorhizobium meliloti
GCA_004003555.1	RPMH00000000	SAMN07640788	USDA1206	Sinorhizobium meliloti
GCA_004003565.1	RPML00000000	SAMN07640784	USDA1202	Sinorhizobium meliloti
GCA_004003515.1	RPMF00000000	SAMN07640790	USDA1210	Sinorhizobium meliloti
GCA_004003445.1	RPLZ00000000	SAMN07640796	USDA1221	Sinorhizobium meliloti
GCA_004003475.1	RPMD00000000	SAMN07640792	USDA1212	Sinorhizobium meliloti
GCA_004003365.1	RPLR00000000	SAMN07640804	USDA1264	Sinorhizobium meliloti
GCA_004003335.1	RPLN00000000	SAMN07640808	USDA1308	Sinorhizobium meliloti
GCA_004003435.1	RPLY00000000	SAMN07640797	USDA1222	Sinorhizobium meliloti
GCA_004003395.1	RPLX00000000	SAMN07640798	USDA1225	Sinorhizobium meliloti
GCA_004003355.1	RPLW00000000	SAMN07640799	USDA1227	Sinorhizobium meliloti
GCA_004003345.1	RPLQ00000000	SAMN07640805	USDA1280	Sinorhizobium meliloti
GCA_004003265.1	RPLC00000000	SAMN07640820	USDA1456	Sinorhizobium meliloti
GCA_004003275.1	RPLF00000000	SAMN07640816	USDA1397	Sinorhizobium meliloti
GCA_004003215.1	RPKD00000000	SAMN07640847	USDA1591	Sinorhizobium meliloti
GCA_004003245.1	RPLE00000000	SAMN07640817	USDA1415	Sinorhizobium meliloti
GCA_004003235.1	RPLD00000000	SAMN07640818	USDA1416	Sinorhizobium meliloti
GCA_004003155.1	RPKV00000000	SAMN07640828	USDA1497	Sinorhizobium meliloti
GCA_004003175.1	RPLS00000000	SAMN07640803	USDA1248	Sinorhizobium meliloti
GCA_004003255.1	RPLL00000000	SAMN07640810	USDA1325	Sinorhizobium meliloti
GCA_004003165.1	RPKU00000000	SAMN07640829	USDA1501	Sinorhizobium meliloti
GCA_004003105.1	RPKR00000000	SAMN07640832	USDA1520	Sinorhizobium meliloti
GCA_004003085.1	RPKM00000000	SAMN07640837	USDA1562	Sinorhizobium meliloti
GCA_004003075.1	RPKG00000000	SAMN07640843	USDA1583	Sinorhizobium meliloti
GCA_004003025.1	RPJT00000000	SAMN07640857	USDA1614	Sinorhizobium meliloti
GCA_004003095.1	RPKF00000000	SAMN07640845	USDA1589	Sinorhizobium meliloti
GCA_004003015.1	RPJS00000000	SAMN07640858	USDA1616	Sinorhizobium meliloti
GCA_004003005.1	RPLK00000000	SAMN07640811	USDA1335	Sinorhizobium meliloti
GCA_004002995.1	RPLH00000000	SAMN07640814	USDA1379	Sinorhizobium meliloti
GCA_004002925.1	RPKY00000000	SAMN07640824	USDA1467	Sinorhizobium meliloti
GCA_004002945.1	RPLB00000000	SAMN07640821	USDA1462	Sinorhizobium meliloti
GCA_004002915.1	RPKT00000000	SAMN07640830	USDA1508	Sinorhizobium meliloti
GCA_004002905.1	RPKX00000000	SAMN07640826	USDA1491	Sinorhizobium meliloti
GCA_004002895.1	RPKS00000000	SAMN07640831	USDA1519	Sinorhizobium meliloti
GCA_004002845.1	RPKP00000000	SAMN07640834	USDA1533	Sinorhizobium meliloti
GCA_004002835.1	RPKL00000000	SAMN07640838	USDA1565	Sinorhizobium meliloti
GCA_004002825.1	RPKK00000000	SAMN07640839	USDA1566	Sinorhizobium meliloti
GCA_004002805.1	RPKQ00000000	SAMN07640833	USDA1530	Sinorhizobium meliloti
GCA_004002795.1	RPKI00000000	SAMN07640841	USDA1580	Sinorhizobium meliloti
GCA_004002735.1	RPJV00000000	SAMN07640855	USDA1612	Sinorhizobium meliloti
GCA_004002715.1	RPKB00000000	SAMN07640849	USDA1594	Sinorhizobium meliloti
GCA_004002705.1	RPKA00000000	SAMN07640850	USDA1603	Sinorhizobium meliloti
GCA_004002615.1	RPKC00000000	SAMN07640848	USDA1593	Sinorhizobium meliloti
GCA_004003965.1	RPNA00000000	SAMN07640768	USDA1162	Sinorhizobium meliloti
GCA_004003845.1	RPMM00000000	SAMN07640782	USDA1200	Sinorhizobium meliloti
GCA_004003925.1	RPMX00000000	SAMN07640771	USDA1170	Sinorhizobium meliloti
GCA_004003815.1	RPMA00000000	SAMN07640795	USDA1220	Sinorhizobium meliloti
GCA_004003915.1	RPMV00000000	SAMN07640773	USDA1180	Sinorhizobium meliloti
GCA_004004035.1	RPNG00000000	SAMN07640761	USDA1107	Sinorhizobium meliloti
GCA_004003985.1	RPNC00000000	SAMN07640766	USDA1158	Sinorhizobium meliloti
GCA_004004455.1	RPNQ00000000	SAMN07640749	USDA1008	Sinorhizobium meliloti
GCA_004004445.1	RPNK00000000	SAMN07640757	USDA1027	Sinorhizobium meliloti
GCA_004004405.1	RPNI00000000	SAMN07640759	USDA1035	Sinorhizobium meliloti
GCA_004004345.1	RPNB00000000	SAMN07640767	USDA1161	Sinorhizobium meliloti
GCA_004004355.1	RPMZ00000000	SAMN07640769	USDA1163	Sinorhizobium meliloti
GCA_004004435.1	RPNO00000000	SAMN07640753	USDA1022	Sinorhizobium meliloti
GCA_004004375.1	RPNF00000000	SAMN07640762	USDA1146	Sinorhizobium meliloti
GCA_004004335.1	RPMW00000000	SAMN07640772	USDA1171	Sinorhizobium meliloti
GCA_004004255.1	RPMR00000000	SAMN07640777	USDA1187	Sinorhizobium meliloti
GCA_004004265.1	RPMO00000000	SAMN07640780	USDA1198	Sinorhizobium meliloti
GCA_004004315.1	RPMS00000000	SAMN07640776	USDA1186	Sinorhizobium meliloti
GCA_004004235.1	RPMQ00000000	SAMN07640778	USDA1191	Sinorhizobium meliloti
GCA_004004225.1	RPNT00000000	SAMN07640746	USDA1005	Sinorhizobium meliloti
GCA_004004215.1	RPNS00000000	SAMN07640747	USDA1006	Sinorhizobium meliloti
GCA_004004155.1	RPNN00000000	SAMN07640754	USDA1023	Sinorhizobium meliloti
GCA_004004135.1	RPNP00000000	SAMN07640751	USDA1018	Sinorhizobium meliloti
GCA_004004145.1	RPNR00000000	SAMN07640748	USDA1007	Sinorhizobium meliloti
GCA_004004125.1	RPNL00000000	SAMN07640756	USDA1025	Sinorhizobium meliloti
GCA_004004115.1	RPNM00000000	SAMN07640755	USDA1024A	Sinorhizobium meliloti
GCA_004004075.1	RPNJ00000000	SAMN07640758	USDA1031	Sinorhizobium meliloti
GCA_004001965.1	RPIR00000000	SAMN07640889	USDA1696	Sinorhizobium meliloti
GCA_004001835.1	RPIL00000000	SAMN07640895	USDA1708	Sinorhizobium meliloti
GCA_004001905.1	RPIM00000000	SAMN07640894	USDA1706	Sinorhizobium meliloti
GCA_004001915.1	RPIP00000000	SAMN07640891	USDA1700	Sinorhizobium meliloti
GCA_004001815.1	RPIH00000000	SAMN07640899	USDA1730	Sinorhizobium meliloti
GCA_004001855.1	RPIK00000000	SAMN07640896	USDA1710	Sinorhizobium meliloti
GCA_004001825.1	RPIJ00000000	SAMN07640897	USDA1719	Sinorhizobium meliloti
GCA_004001805.1	RPIG00000000	SAMN07640900	USDA1734	Sinorhizobium meliloti
GCA_004001745.1	RPIF00000000	SAMN07640901	USDA1742	Sinorhizobium meliloti
GCA_004001715.1	RPIE00000000	SAMN07640902	USDA1751	Sinorhizobium meliloti
GCA_004001705.1	RPIB00000000	SAMN07640905	USDA1770	Sinorhizobium meliloti
GCA_004001735.1	RPHZ00000000	SAMN07640907	USDA1787	Sinorhizobium meliloti
GCA_004001665.1	RPIC00000000	SAMN07640904	USDA1767	Sinorhizobium meliloti
GCA_004001675.1	RPHW00000000	SAMN07640910	USDA1791	Sinorhizobium meliloti
GCA_004001725.1	RPID00000000	SAMN07640903	USDA1760	Sinorhizobium meliloti
GCA_004001635.1	RPHT00000000	SAMN07640913	USDA1794	Sinorhizobium meliloti
GCA_004001625.1	RPHM00000000	SAMN07640920	USDA1819	Sinorhizobium meliloti
GCA_004001565.1	RPHY00000000	SAMN07640908	USDA1788	Sinorhizobium meliloti
GCA_004001505.1	RPHV00000000	SAMN07640911	USDA1792	Sinorhizobium meliloti
GCA_004001495.1	RPHS00000000	SAMN07640914	USDA1795	Sinorhizobium meliloti
GCA_004001575.1	RPHX00000000	SAMN07640909	USDA1790	Sinorhizobium meliloti
GCA_004001585.1	RPIA00000000	SAMN07640906	USDA1777	Sinorhizobium meliloti
GCA_004001465.1	RPHU00000000	SAMN07640912	USDA1793	Sinorhizobium meliloti
GCA_004001485.1	RPHR00000000	SAMN07640915	USDA1796	Sinorhizobium meliloti
GCA_004001475.1	RPHQ00000000	SAMN07640916	USDA1803	Sinorhizobium meliloti
GCA_004001395.1	RPHN00000000	SAMN07640919	USDA1810	Sinorhizobium meliloti
GCA_004001405.1	RPHP00000000	SAMN07640917	USDA1804	Sinorhizobium meliloti
GCA_004001375.1	RPHO00000000	SAMN07640918	USDA1808	Sinorhizobium meliloti
GCA_004001385.1	RPHL00000000	SAMN07640923	USDA1883	Sinorhizobium meliloti
GCA_004001365.1	RPHK00000000	SAMN07640925	USDA1919	Sinorhizobium meliloti
GCA_004002185.1	RPIN00000000	SAMN07640893	USDA1703	Sinorhizobium meliloti
GCA_004002355.1	RPJQ00000000	SAMN07640861	USDA1623	Sinorhizobium meliloti
GCA_004002535.1	RPJA00000000	SAMN07640879	USDA1666	Sinorhizobium meliloti
GCA_004002495.1	RPIS00000000	SAMN07640888	USDA1695	Sinorhizobium meliloti
GCA_004002425.1	RPKE00000000	SAMN07640846	USDA1590	Sinorhizobium meliloti
GCA_004002455.1	RPKJ00000000	SAMN07640840	USDA1571	Sinorhizobium meliloti
GCA_004002485.1	RPIX00000000	SAMN07640883	USDA1687	Sinorhizobium meliloti
GCA_004002695.1	RPJU00000000	SAMN07640856	USDA1613	Sinorhizobium meliloti
GCA_004002675.1	RPKO00000000	SAMN07640835	USDA1550	Sinorhizobium meliloti
GCA_004002635.1	RPKH00000000	SAMN07640842	USDA1581	Sinorhizobium meliloti
GCA_004002545.1	RPJC00000000	SAMN07640877	USDA1661	Sinorhizobium meliloti
GCA_004002605.1	RPJR00000000	SAMN07640859	USDA1617	Sinorhizobium meliloti
GCA_004002465.1	RPKZ00000000	SAMN07640823	USDA1464	Sinorhizobium meliloti
GCA_004002165.1	RPIZ00000000	SAMN07640881	USDA1676	Sinorhizobium meliloti
GCA_004002255.1	RPJG00000000	SAMN07640873	USDA1655	Sinorhizobium meliloti
GCA_004002195.1	RPJE00000000	SAMN07640875	USDA1659	Sinorhizobium meliloti
GCA_004002055.1	RPIO00000000	SAMN07640892	USDA1702	Sinorhizobium meliloti
GCA_004002175.1	RPJD00000000	SAMN07640876	USDA1660	Sinorhizobium meliloti
GCA_004002125.1	RPJF00000000	SAMN07640874	USDA1656	Sinorhizobium meliloti
GCA_004002035.1	RPIW00000000	SAMN07640884	USDA1688	Sinorhizobium meliloti
GCA_004002105.1	RPIY00000000	SAMN07640882	USDA1678	Sinorhizobium meliloti
GCA_004001995.1	RPIU00000000	SAMN07640886	USDA1692	Sinorhizobium meliloti
GCA_004002015.1	RPIV00000000	SAMN07640885	USDA1691	Sinorhizobium meliloti
GCA_004002045.1	RPII00000000	SAMN07640898	USDA1724	Sinorhizobium meliloti
GCA_004001925.1	RPIQ00000000	SAMN07640890	USDA1699	Sinorhizobium meliloti
GCA_004004675.1	RPNV00000000	SAMN07640930	3085	Sinorhizobium meliloti
GCA_004004685.1	RPNY00000000	SAMN07640927	2119	Sinorhizobium meliloti
GCA_004017575.1	RPJO00000000	SAMN07640863	USDA1626	Sinorhizobium meliloti
GCA_004022115.1	RPLI00000000	SAMN07640813	USDA1357	Sinorhizobium meliloti
GCA_004022085.1	RPLG00000000	SAMN07640815	USDA1389	Sinorhizobium meliloti
GCA_004022075.1	RPLO00000000	SAMN07640807	USDA1302	Sinorhizobium meliloti
GCA_004017705.1	RPNX00000000	SAMN07640928	3011	Sinorhizobium meliloti
GCA_004017685.1	RPMT00000000	SAMN07640775	USDA1184	Sinorhizobium meliloti
GCA_004017665.1	RPLT00000000	SAMN07640802	USDA1237	Sinorhizobium meliloti
GCA_004017615.1	RPKW00000000	SAMN07640827	USDA1496	Sinorhizobium meliloti
GCA_004017605.1	RPKN00000000	SAMN07640836	USDA1561	Sinorhizobium meliloti

SRA Data Details

Parameter	Value
Data volume, Gbases	45
Data volume, Mbytes	29769

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Ensifer

Ensifer spp associated with Medicago whole genome sequencing

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