Enterobacteriaceae (ID 429766) - BioProject

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Accession: PRJDB6655 ID: 429766

Enterobacteriaceae

Whole genome sequencing of carbapenem-resistant Enterobacteriaceae isolated in Vietnam

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This project is a component of the AMED CRE Consortium: Carbapenem-resistant Enterobacteriaceae in Asia

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12 additional projects are components of the AMED CRE Consortium: Carbapenem-resistant Enterobacteriaceae in Asia.

The purpose of this project is to investigate the prevalence of carbapenem-resistant Enterobacteriaceae in Asian countries. Special emphasis is laid on plasmids harboring carbapenemase genes responsible for the resistance.

Accession	PRJDB6655
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Enterobacteriaceae[Taxonomy ID: 543] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae
Grants	"Japan Initiative for Global Research Network on Infectious Diseases (J-GRID)" (Grant ID N/A, Japan Agency for Medical Research and Development) "Research Program on Emerging and Re-emerging Infectious Diseases" (Grant ID N/A, Japan Agency for Medical Research and Development)
Submission	Registration date: 17-Jan-2018 National Institute of Infectious Diseases
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	18423
WGS master	76
Genomic DNA	33
Protein Sequences	31949
Other datasets
BioSample	77
Assembly	77

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

1
76
77

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_003114915.2	BFCL00000000	4	SAMD00112927	MH17-012N	Citrobacter freundii
GCA_003114935.2	BFCM00000000	1	SAMD00112928	MH16-522D	Citrobacter freundii
GCA_016859905.1	BGNQ00000000		SAMD00117340	MH13-050M	Citrobacter freundii
GCA_016859885.1	BGNP00000000		SAMD00117339	MH13-047D	Citrobacter freundii
GCA_016860045.1	BGPC00000000		SAMD00118716	MH14-073M	Citrobacter freundii
GCA_016860025.1	BGPB00000000		SAMD00118715	MH14-071M	Enterobacter cloacae
GCA_014190135.1	BMAB00000000	2	SAMD00222503	NIHE14-1904	Enterobacter hormaechei
GCA_014190075.1	BMAA00000000	1	SAMD00222502	MH17-539M	Enterobacter hormaechei
GCA_019974415.1	BPUF00000000	2	SAMD00399217	NIHE10-0087	Enterobacter hormaechei
GCA_003114975.2	BFCO00000000	5	SAMD00112930	MH13-051M	Escherichia coli
GCA_012057105.1	BHWO00000000		SAMD00141415	MH15-272M	Escherichia coli
GCA_012056965.1	BHWM00000000		SAMD00141413	MH15-266M	Escherichia coli
GCA_012056855.1	BHWL00000000		SAMD00141412	MH15-262M	Escherichia coli
GCA_012056745.1	BHWK00000000		SAMD00141411	MH15-257M	Escherichia coli
GCA_012056685.1	BHWJ00000000		SAMD00141410	MH15-214M	Escherichia coli
GCA_012056285.1	BHWG00000000		SAMD00141407	MH15-186M	Escherichia coli
GCA_012056185.1	BHWF00000000		SAMD00141406	MH15-180M	Escherichia coli
GCA_012055855.1	BHWC00000000		SAMD00141403	MH15-166M	Escherichia coli
GCA_016860005.1	BGPA00000000		SAMD00118714	MH14-070D	Escherichia coli
GCA_016859985.1	BGOZ00000000		SAMD00118713	MH14-069M	Escherichia coli
GCA_016859965.1	BGOY00000000		SAMD00118712	MH14-064M	Escherichia coli
GCA_016859945.1	BGNS00000000		SAMD00117342	MH13-060M	Escherichia coli
GCA_016859925.1	BGNR00000000		SAMD00117341	MH13-058M	Escherichia coli
GCA_016860185.1	BGPJ00000000		SAMD00118723	MH14-138M	Escherichia coli
GCA_016860285.1	BGPO00000000		SAMD00118728	MH16-327M	Escherichia coli
GCA_016860265.1	BGPN00000000		SAMD00118727	MH14-237M	Escherichia coli
GCA_016860245.1	BGPM00000000		SAMD00118726	MH14-236M	Escherichia coli
GCA_016860225.1	BGPL00000000		SAMD00118725	MH14-192M	Escherichia coli
GCA_016859865.1	BGNO00000000		SAMD00117338	MH13-040H	Escherichia coli
GCA_016860145.1	BGPH00000000		SAMD00118721	MH14-103M	Escherichia coli
GCA_016860125.1	BGPG00000000		SAMD00118720	MH14-097M	Escherichia coli
GCA_016860105.1	BGPF00000000		SAMD00118719	MH14-093M	Escherichia coli
GCA_016860085.1	BGPE00000000		SAMD00118718	MH14-089M	Escherichia coli
GCA_016860065.1	BGPD00000000		SAMD00118717	MH14-074D	Escherichia coli
GCA_016859805.1	BGNL00000000		SAMD00117335	MH13-017M	Escherichia coli
GCA_016859825.1	BGNM00000000		SAMD00117336	MH13-032D	Escherichia coli
GCA_018327585.1	BLSL00000000		SAMD00213800	MH15-170M	Escherichia coli
GCA_018327605.1	BLSM00000000		SAMD00213801	MH15-171M	Escherichia coli
GCA_018402925.1	BLSJ00000000		SAMD00213798	MH15-168M	Escherichia coli
GCA_019975215.1	BPUH00000000	1	SAMD00399219	NIHE15-1569	Escherichia coli
GCA_003203355.1	BGNE00000000		SAMD00117347	MH17-014Ds	Escherichia coli
GCA_003203335.1	BGND00000000		SAMD00117346	MH16-510M	Escherichia coli
GCA_003203315.1	BGNC00000000		SAMD00117345	MH16-401M	Escherichia coli
GCA_003203295.1	BGNB00000000		SAMD00117344	MH16-331M	Escherichia coli
GCA_003114955.1	BFCN00000000		SAMD00112929	MH17-008M	Escherichia coli
GCA_011764365.2		6	SAMD00141414	MH15-269M	Klebsiella pneumoniae
GCA_011764385.1	BHWP00000000		SAMD00141416	MH15-274M	Klebsiella pneumoniae
GCA_012056085.1	BHWE00000000		SAMD00141405	MH15-174M	Klebsiella pneumoniae
GCA_012056005.1	BHWD00000000		SAMD00141404	MH15-172M	Klebsiella pneumoniae
GCA_012056585.1	BHWI00000000		SAMD00141409	MH15-199M	Klebsiella pneumoniae
GCA_012056395.1	BHWH00000000		SAMD00141408	MH15-197M	Klebsiella pneumoniae
GCA_003115175.2	BFCY00000000	1	SAMD00112940	MH16-390M	Klebsiella pneumoniae
GCA_003115075.2	BFCT00000000	1	SAMD00112935	MH15-208H	Klebsiella pneumoniae
GCA_003115035.2	BFCR00000000	1	SAMD00112933	MH16-398D	Klebsiella pneumoniae
GCA_003115055.2	BFCS00000000	1	SAMD00112934	MH15-258M	Klebsiella pneumoniae
GCA_003115095.2	BFCU00000000	1	SAMD00112936	MH15-191M	Klebsiella pneumoniae
GCA_003115215.2	BFDA00000000	1	SAMD00112942	MH16-335M	Klebsiella pneumoniae
GCA_003115115.2	BFCV00000000	1	SAMD00112937	MH13-055M	Klebsiella pneumoniae
GCA_003115015.2	BFCQ00000000	1	SAMD00112932	MH15-289M	Klebsiella pneumoniae
GCA_019975195.1	BPUG00000000	1	SAMD00399218	NIHE12-0848	Klebsiella pneumoniae
GCA_018402945.1	BLSK00000000		SAMD00213799	MH15-169M	Klebsiella pneumoniae
GCA_016860165.1	BGPI00000000		SAMD00118722	MH14-110M	Klebsiella pneumoniae
GCA_016860205.1	BGPK00000000		SAMD00118724	MH14-153M	Klebsiella pneumoniae
GCA_016859845.1	BGNN00000000		SAMD00117337	MH13-039D	Klebsiella pneumoniae
GCA_003115335.1	BFDG00000000		SAMD00112948	MH17-011M	Klebsiella pneumoniae
GCA_003115315.1	BFDF00000000		SAMD00112947	MH16-519D	Klebsiella pneumoniae
GCA_003115295.1	BFDE00000000		SAMD00112946	MH17-536D	Klebsiella pneumoniae
GCA_003115275.1	BFDD00000000		SAMD00112945	MH17-553M	Klebsiella pneumoniae
GCA_003115255.1	BFDC00000000		SAMD00112944	MH16-444M	Klebsiella pneumoniae
GCA_003115235.1	BFDB00000000		SAMD00112943	MH17-017D	Klebsiella pneumoniae
GCA_003115195.1	BFCZ00000000		SAMD00112941	MH17-556D	Klebsiella pneumoniae
GCA_003115155.1	BFCX00000000		SAMD00112939	MH17-007D	Klebsiella pneumoniae
GCA_003115135.1	BFCW00000000		SAMD00112938	MH17-010D	Klebsiella pneumoniae
GCA_003114995.1	BFCP00000000		SAMD00112931	MH17-004D	Klebsiella pneumoniae
GCA_002897415.1	BFAI00000000		SAMD00109349	MH17-016D	Klebsiella pneumoniae
GCA_003114875.2	BFCJ00000000	1	SAMD00112925	MH16-367M	Morganella morganii
GCA_003114895.2	BFCK00000000	1	SAMD00112926	MH13-009N	Proteus mirabilis

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Enterobacteriaceae

Whole genome sequencing of carbapenem-resistant Enterobacteriaceae isolated in Vietnam

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