Metagenome-assembled genome: SRR13921776_bin.26_me... - BioSample

Metagenome-assembled genome: SRR13921776_bin.26_metawrap_v1.3_MAG

Identifiers: BioSample: SAMEA112228029; SRA: ERS14338932

Organism: Romboutsia timonensis
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Romboutsia

Attributes

broad-scale environmental context	mouse digestive system
collection date	2012-04-01
environmental medium	feces
geographic location	Japan
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	Gut micrbiota dysbiosis associated with PIGA gene (responsible for GPI anchor biosynthesis)
sample name	SRR13921776_bin.26_metawrap_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-12-13
ENA-LAST-UPDATE	2022-12-13
External Id	SAMEA112228029
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-12-13T00:42:51Z
INSDC last update	2022-12-13T00:42:51Z
INSDC status	public
Submitter Id	SRR13921776_bin.26_metawrap_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	not provided
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metawrap v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	51.67
completeness software	CheckM
contamination score	0.7
geographic location (latitude)	35.6762
geographic location (longitude)	139.6503
local environmental context	digestive tube
metagenomic source	mouse gut metagenome
sample derived from	SAMN18221106
sequencing method	Illumina HiSeq 2000
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Peptostreptococcaceae;g__Romboutsia;s__Romboutsia timonensis
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13921776 of study SRP310062.

BioProject: PRJEB57839
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Submission: EBI; 2022-12-14

Accession:: SAMEA112228029
ID:: 32221425

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Metagenome-assembled genome: SRR13921776_bin.26_metawrap_v1.3_MAG

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