U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-assembled genome: SRR13921777_bin.65_metawrap_v1.3_MAG

Identifiers
BioSample: SAMEA112228058; SRA: ERS14338961
Organism
uncultured Pseudoflavonifractor sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Pseudoflavonifractor; environmental samples
Attributes
broad-scale environmental contextmouse digestive system
collection date2012-04-01
environmental mediumfeces
geographic locationJapan
investigation typemetagenome-assembled genome
isolation sourcemouse gut metagenome
project nameGut micrbiota dysbiosis associated with PIGA gene (responsible for GPI anchor biosynthesis)
sample nameSRR13921777_bin.65_metawrap_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-12-17
ENA-LAST-UPDATE2022-12-17
External IdSAMEA112228058
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-12-17T00:47:17Z
INSDC last update2022-12-17T00:47:17Z
INSDC statuspublic
Submitter IdSRR13921777_bin.65_metawrap_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarenot provided
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetawrap v1.3
broker nameEMG broker account, EMBL-EBI
completeness score82.7
completeness softwareCheckM
contamination score2.13
geographic location (latitude)35.6762
geographic location (longitude)139.6503
local environmental contextdigestive tube
metagenomic sourcemouse gut metagenome
sample derived fromSAMN18221105
sequencing methodIllumina HiSeq 2000
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Pseudoflavonifractor;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13921777 of study SRP310062.

BioProject
PRJEB57839
Retrieve all samples from this project

Submission
EBI; 2022-12-18
Accession:
SAMEA112228058
ID:
32300527

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center