U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-assembled genome: SRR12203263_bin.2_metaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA110426345; SRA: ERS12524271
Organism
uncultured Clostridia bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; environmental samples
Attributes
broad-scale environmental contextPig digestive system
collection datenot provided
environmental mediumFeces
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcepig gut metagenome
project nameShotgun metagenomic sequencing of fecal samples collected from 18 pregnant sows at days 37 (beginning) and 114 (immediately pre-farrowing) of pregnancy reveal that parity is associated with changes in the porcine gut microbiome at the end, and not the beginning, of pregnancy. Shotgun metagenomic sequencing of fecal swabs from 3 offspring from each mother 10 days after birth reveals that maternal parity is associated with the early infant gut microbiome composition.
sample nameSRR12203263_bin.2_metaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-28
ENA-LAST-UPDATE2022-07-28
External IdSAMEA110426345
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-07-28T16:25:47Z
INSDC last update2022-07-28T16:25:47Z
INSDC statuspublic
Submitter IdSRR12203263_bin.2_metaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremegahit v1.2.9
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score54.47
completeness softwareCheckM
contamination score3.45
geographic location (latitude)39.8687
geographic location (longitude)-75.7547
local environmental contextIntestine
metagenomic sourcepig gut metagenome
sample derived fromSAMN15497237
sequencing methodNextSeq 500
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__;g__;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12203263 of study SRP271464.

BioProject
PRJEB53041
Retrieve all samples from this project

Submission
EBI; 2022-07-29
Accession:
SAMEA110426345
ID:
30039699

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center