ID 841933 - BioProject

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Accession: PRJEB53041 ID: 841933

EMG produced TPA metagenomics assembly of PRJNA645191 data set (Parity is associated with maternal gut microbiome composition during pregnancy and offspring microbiome composition in pigs).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA645191, and was assembled with megahit v1. More...

Accession	PRJEB53041
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 24-May-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6798
WGS master	134
Publications
PubMed	1
PMC	1
Other datasets
BioSample	134
Assembly	134

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

134
134

Assembly	WGS	BioSample	Taxonomy
GCA_945980865.1	CAMFQZ000000000	SAMEA110426215	Akkermansia muciniphila
GCA_945988475.1	CAMFTH000000000	SAMEA110426319	Alistipes senegalensis
GCA_945981045.1	CAMFRA000000000	SAMEA110426338	Bacteroides fluxus
GCA_946001055.1	CAMFXT000000000	SAMEA110426276	Bacteroides fragilis
GCA_945966595.1	CAMFNW000000000	SAMEA110426216	Bacteroides ilei
GCA_945991995.1	CAMFVF000000000	SAMEA110426306	Bacteroides pyogenes
GCA_945993405.1	CAMFVY000000000	SAMEA110426318	Bacteroides stercoris
GCA_946001085.1	CAMFYD000000000	SAMEA110426322	Bacteroides thetaiotaomicron
GCA_945966435.1	CAMFNR000000000	SAMEA110426222	Bifidobacterium choerinum
GCA_946000895.1	CAMFXM000000000	SAMEA110426262	Bifidobacterium pseudolongum
GCA_945989185.1	CAMFUC000000000	SAMEA110426217	Bifidobacterium thermacidophilum
GCA_946001305.1	CAMFYF000000000	SAMEA110426337	Butyricimonas virosa
GCA_945984075.1	CAMFSW000000000	SAMEA110426279	Campylobacter coli
GCA_945981175.1	CAMFRD000000000	SAMEA110426277	Comamonas aquatica
GCA_945980475.1	CAMFQU000000000	SAMEA110426244	Escherichia coli
GCA_946001075.1	CAMFYC000000000	SAMEA110426317	Escherichia coli
GCA_945989865.1	CAMFUQ000000000	SAMEA110426308	Escherichia coli
GCA_945993095.1	CAMFVW000000000	SAMEA110426285	Fusobacterium mortiferum
GCA_945966395.1	CAMFNZ000000000	SAMEA110426309	Fusobacterium necrophorum
GCA_945994585.1	CAMFWE000000000	SAMEA110426321	Lactobacillus amylovorus
GCA_945994515.1	CAMFWB000000000	SAMEA110426328	Lactobacillus crispatus
GCA_945981195.1	CAMFRC000000000	SAMEA110426293	Lactobacillus delbrueckii
GCA_945993085.1	CAMFVX000000000	SAMEA110426264	Megasphaera elsdenii
GCA_946000995.1	CAMFXU000000000	SAMEA110426238	Methanobrevibacter gottschalkii
GCA_945981285.1	CAMFRE000000000	SAMEA110426333	Ruminococcus flavefaciens
GCA_946001015.1	CAMFXY000000000	SAMEA110426334	Ruminococcus flavefaciens
GCA_945992175.1	CAMFVS000000000	SAMEA110426263	Turicibacter sanguinis
GCA_945965205.1	CAMFMX000000000	SAMEA110426296	[Eubacterium] saphenum
GCA_945966235.1	CAMFOA000000000	SAMEA110426267	uncultured Alistipes sp.
GCA_945977705.1	CAMFPX000000000	SAMEA110426226	uncultured Alistipes sp.
GCA_945992105.1	CAMFVM000000000	SAMEA110426249	uncultured Alistipes sp.
GCA_945980855.1	CAMFQY000000000	SAMEA110426266	uncultured Alistipes sp.
GCA_945989435.1	CAMFUN000000000	SAMEA110426229	uncultured Alistipes sp.
GCA_945966685.1	CAMFOC000000000	SAMEA110426294	uncultured Atopobium sp.
GCA_945992855.1	CAMFVU000000000	SAMEA110426332	uncultured Bacillales bacterium
GCA_945966295.1	CAMFNY000000000	SAMEA110426302	uncultured Bacteroidales bacterium
GCA_945966175.1	CAMFNN000000000	SAMEA110426235	uncultured Bacteroidales bacterium
GCA_945982345.1	CAMFSA000000000	SAMEA110426239	uncultured Bacteroidales bacterium
GCA_945983175.1	CAMFSP000000000	SAMEA110426346	uncultured Bacteroidales bacterium
GCA_945980455.1	CAMFQT000000000	SAMEA110426297	uncultured Bacteroidales bacterium
GCA_945980435.1	CAMFQS000000000	SAMEA110426295	uncultured Bacteroidales bacterium
GCA_945967355.1	CAMFOE000000000	SAMEA110426236	uncultured Bacteroidales bacterium
GCA_945966155.1	CAMFNL000000000	SAMEA110426232	uncultured Bacteroidales bacterium
GCA_946001035.1	CAMFXZ000000000	SAMEA110426313	uncultured Bacteroidales bacterium
GCA_945966245.1	CAMFNX000000000	SAMEA110426329	uncultured Bacteroidales bacterium
GCA_945980245.1	CAMFQN000000000	SAMEA110426220	uncultured Bacteroidales bacterium
GCA_945977235.1	CAMFPT000000000	SAMEA110426227	uncultured Bacteroidales bacterium
GCA_946001025.1	CAMFXS000000000	SAMEA110426283	uncultured Bacteroidales bacterium
GCA_945989295.1	CAMFUM000000000	SAMEA110426233	uncultured Bacteroidales bacterium
GCA_945989425.1	CAMFUO000000000	SAMEA110426224	uncultured Bacteroidales bacterium
GCA_946001265.1	CAMFYE000000000	SAMEA110426250	uncultured Bacteroides sp.
GCA_946001095.1	CAMFYH000000000	SAMEA110426219	uncultured Bacteroides sp.
GCA_945989225.1	CAMFUI000000000	SAMEA110426336	uncultured Bacteroides sp.
GCA_946001005.1	CAMFXX000000000	SAMEA110426288	uncultured Bacteroides sp.
GCA_945965395.1	CAMFND000000000	SAMEA110426340	uncultured Bacteroides sp.
GCA_945966215.1	CAMFOD000000000	SAMEA110426237	uncultured Bacteroides sp.
GCA_945989505.1	CAMFUP000000000	SAMEA110426230	uncultured Barnesiella sp.
GCA_946000885.1	CAMFXI000000000	SAMEA110426265	uncultured Campylobacter sp.
GCA_945983165.1	CAMFSQ000000000	SAMEA110426310	uncultured Clostridia bacterium
GCA_945966115.1	CAMFNS000000000	SAMEA110426335	uncultured Clostridia bacterium
GCA_945965215.1	CAMFNA000000000	SAMEA110426307	uncultured Clostridia bacterium
GCA_945980395.1	CAMFQQ000000000	SAMEA110426325	uncultured Clostridia bacterium
GCA_946042465.1	CAMGDM000000000	SAMEA110426290	uncultured Clostridia bacterium
GCA_946042315.1	CAMGDJ000000000	SAMEA110426272	uncultured Clostridia bacterium
GCA_946000935.1	CAMFXK000000000	SAMEA110426331	uncultured Clostridia bacterium
GCA_946000905.1	CAMFXN000000000	SAMEA110426305	uncultured Clostridia bacterium
GCA_945983355.1	CAMFSU000000000	SAMEA110426234	uncultured Clostridia bacterium
GCA_945992085.1	CAMFVL000000000	SAMEA110426311	uncultured Clostridia bacterium
GCA_946000985.1	CAMFYA000000000	SAMEA110426339	uncultured Clostridia bacterium
GCA_946001135.1	CAMFXR000000000	SAMEA110426243	uncultured Clostridia bacterium
GCA_946000965.1	CAMFXQ000000000	SAMEA110426324	uncultured Clostridia bacterium
GCA_945989235.1	CAMFUH000000000	SAMEA110426247	uncultured Clostridia bacterium
GCA_946000855.1	CAMFXH000000000	SAMEA110426228	uncultured Clostridia bacterium
GCA_946003185.1	CAMFZF000000000	SAMEA110426271	uncultured Clostridia bacterium
GCA_945992055.1	CAMFVG000000000	SAMEA110426330	uncultured Clostridia bacterium
GCA_946003795.1	CAMFZH000000000	SAMEA110426225	uncultured Clostridia bacterium
GCA_945993075.1	CAMFVV000000000	SAMEA110426251	uncultured Clostridia bacterium
GCA_945994625.1	CAMFWF000000000	SAMEA110426314	uncultured Clostridia bacterium
GCA_945965555.1	CAMFNH000000000	SAMEA110426246	uncultured Clostridia bacterium
GCA_945966195.1	CAMFNK000000000	SAMEA110426273	uncultured Clostridia bacterium
GCA_945982025.1	CAMFRN000000000	SAMEA110426345	uncultured Clostridia bacterium
GCA_945980555.1	CAMFQV000000000	SAMEA110426323	uncultured Clostridia bacterium
GCA_945981185.1	CAMFRB000000000	SAMEA110426291	uncultured Clostridia bacterium
GCA_945992255.1	CAMFVQ000000000	SAMEA110426282	uncultured Clostridia bacterium
GCA_946001165.1	CAMFXW000000000	SAMEA110426257	uncultured Clostridia bacterium
GCA_946041305.1	CAMGCZ000000000	SAMEA110426343	uncultured Clostridia bacterium
GCA_946041315.1	CAMGDA000000000	SAMEA110426240	uncultured Clostridia bacterium
GCA_945989025.1	CAMFUA000000000	SAMEA110426278	uncultured Clostridia bacterium
GCA_945991975.1	CAMFVK000000000	SAMEA110426342	uncultured Clostridia bacterium
GCA_946000945.1	CAMFXL000000000	SAMEA110426218	uncultured Clostridia bacterium
GCA_945965345.1	CAMFNJ000000000	SAMEA110426270	uncultured Clostridium sp.
GCA_945966415.1	CAMFNV000000000	SAMEA110426304	uncultured Clostridium sp.
GCA_946041345.1	CAMGCX000000000	SAMEA110426248	uncultured Clostridium sp.
GCA_945981275.1	CAMFRF000000000	SAMEA110426268	uncultured Collinsella sp.
GCA_945989175.1	CAMFUB000000000	SAMEA110426269	uncultured Erysipelotrichaceae bacterium
GCA_945992165.1	CAMFVR000000000	SAMEA110426280	uncultured Escherichia sp.
GCA_945966185.1	CAMFNM000000000	SAMEA110426256	uncultured Eubacterium sp.
GCA_945991965.1	CAMFVI000000000	SAMEA110426347	uncultured Firmicutes bacterium
GCA_946001045.1	CAMFXV000000000	SAMEA110426252	uncultured Firmicutes bacterium
GCA_945992015.1	CAMFVE000000000	SAMEA110426300	uncultured Firmicutes bacterium
GCA_945992005.1	CAMFVJ000000000	SAMEA110426327	uncultured Fusobacterium sp.
GCA_946000975.1	CAMFYB000000000	SAMEA110426298	uncultured Lachnospiraceae bacterium
GCA_946041185.1	CAMGCW000000000	SAMEA110426281	uncultured Lachnospiraceae bacterium
GCA_945982875.1	CAMFSM000000000	SAMEA110426303	uncultured Lachnospiraceae bacterium
GCA_945980585.1	CAMFQW000000000	SAMEA110426316	uncultured Lachnospiraceae bacterium
GCA_946000915.1	CAMFXO000000000	SAMEA110426299	uncultured Lachnospiraceae bacterium
GCA_945967405.1	CAMFOF000000000	SAMEA110426258	uncultured Lachnospiraceae bacterium
GCA_945980315.1	CAMFQP000000000	SAMEA110426344	uncultured Lachnospiraceae bacterium
GCA_946042555.1	CAMGDN000000000	SAMEA110426274	uncultured Lachnospiraceae bacterium
GCA_945994545.1	CAMFWD000000000	SAMEA110426292	uncultured Lachnospiraceae bacterium
GCA_945993735.1	CAMFVZ000000000	SAMEA110426260	uncultured Lactobacillus sp.
GCA_945989245.1	CAMFUF000000000	SAMEA110426284	uncultured Lactobacillus sp.
GCA_945989035.1	CAMFTZ000000000	SAMEA110426253	uncultured Lactobacillus sp.
GCA_946000925.1	CAMFXJ000000000	SAMEA110426242	uncultured Mollicutes bacterium
GCA_945992195.1	CAMFVN000000000	SAMEA110426259	uncultured Oribacterium sp.
GCA_945965245.1	CAMFNC000000000	SAMEA110426275	uncultured Porphyromonas sp.
GCA_945980425.1	CAMFQR000000000	SAMEA110426286	uncultured Prevotella sp.
GCA_946041245.1	CAMGCV000000000	SAMEA110426326	uncultured Prevotella sp.
GCA_945992125.1	CAMFVO000000000	SAMEA110426245	uncultured Prevotellaceae bacterium
GCA_945985135.1	CAMFSX000000000	SAMEA110426301	uncultured Prevotellaceae bacterium
GCA_945982075.1	CAMFRS000000000	SAMEA110426341	uncultured Ruminococcus sp.
GCA_946003605.1	CAMFZG000000000	SAMEA110426223	uncultured Rummeliibacillus sp.
GCA_945983435.1	CAMFSV000000000	SAMEA110426255	uncultured Solobacterium sp.
GCA_945982335.1	CAMFRZ000000000	SAMEA110426261	uncultured Solobacterium sp.
GCA_945989275.1	CAMFUJ000000000	SAMEA110426254	uncultured Solobacterium sp.
GCA_945994575.1	CAMFWA000000000	SAMEA110426312	uncultured Streptococcus sp.
GCA_945965475.1	CAMFNP000000000	SAMEA110426289	uncultured Treponema sp.
GCA_945992155.1	CAMFVP000000000	SAMEA110426221	uncultured Treponema sp.
GCA_946000955.1	CAMFXP000000000	SAMEA110426315	uncultured Treponema sp.
GCA_945966225.1	CAMFNU000000000	SAMEA110426231	uncultured Treponema sp.
GCA_945994565.1	CAMFWC000000000	SAMEA110426287	uncultured Treponema sp.
GCA_945992185.1	CAMFVT000000000	SAMEA110426241	uncultured Treponema sp.
GCA_945988465.1	CAMFTI000000000	SAMEA110426320	uncultured Treponema sp.
GCA_945966465.1	CAMFNT000000000	SAMEA110426348	uncultured bacterium

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EMG produced TPA metagenomics assembly of PRJNA645191 data set (Parity is associated with maternal gut microbiome composition during pregnancy and offspring microbiome composition in pigs).

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