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Metagenome-Assembled Genome: SRR15443029_bin.9_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114450484; SRA: ERS16436945
Organism
uncultured Porphyromonadaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; environmental samples
Attributes
broad-scale environmental contexthuman digestive system
collection date2017-11-29
environmental mediumsaliva
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourceoral metagenome
project nameThis study consists of longitudinal saliva samples from children aged 2 months to 5 years from the Center for Oral Health Research in Appalachia 2 study
sample nameSRR15443029_bin.9_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
INSDC center nameEMG
Submitter IdSRR15443029_bin.9_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEBI-EMG
completeness score98.87
completeness softwareCheckM
contamination score0.0
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextoral cavity
metagenomic sourceoral metagenome
sample derived fromSAMN20770748
scientific_nameuncultured Porphyromonadaceae bacterium
sequencing methodIllumina HiSeq 4000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR15443029 of study SRP331553.

BioProject
PRJEB66073
Retrieve all samples from this project

Submission
EBI; 2023-09-29
Accession:
SAMEA114450484
ID:
37603516

BioProject Nucleotide

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