ID 1017316 - BioProject

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Accession: PRJEB66073 ID: 1017316

EMG produced TPA metagenomics assembly of PRJNA752888 data set (Longitudinal saliva bacteriome and early childhood caries).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA752888, and was assembled with metaspades v3. More...

Accession	PRJEB66073
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578
Submission	Registration date: 14-Sep-2023 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	9792
WGS master	132
Publications
PubMed	1
PMC	1
Other datasets
BioSample	132
Assembly	132

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

132
132

Assembly	WGS	BioSample	Taxonomy
GCA_963554675.1	CAUVSD000000000	SAMEA114450496	Abiotrophia defectiva
GCA_963555115.1	CAUVVL000000000	SAMEA114450540	Actinomyces dentalis
GCA_963555485.1	CAUVVY000000000	SAMEA114450539	Actinomyces gerencseriae
GCA_963555355.1	CAUVUI000000000	SAMEA114450505	Actinomyces graevenitzii
GCA_963555015.1	CAUVUO000000000	SAMEA114450527	Actinomyces massiliensis
GCA_963554205.1	CAUVQY000000000	SAMEA114450557	Actinomyces naeslundii
GCA_963554495.1	CAUVTR000000000	SAMEA114450498	Actinomyces oris
GCA_963554485.1	CAUVSG000000000	SAMEA114450494	Actinomyces oris
GCA_963555255.1	CAUVUT000000000	SAMEA114450489	Aggregatibacter kilianii
GCA_963554335.1	CAUVRY000000000	SAMEA114450497	Capnocytophaga gingivalis
GCA_963554925.1	CAUVTY000000000	SAMEA114450586	Capnocytophaga granulosa
GCA_963554775.1	CAUVTV000000000	SAMEA114450478	Capnocytophaga leadbetteri
GCA_963555215.1	CAUVUU000000000	SAMEA114450530	Capnocytophaga sputigena
GCA_963554905.1	CAUVTZ000000000	SAMEA114450520	Capnocytophaga sputigena
GCA_963554755.1	CAUVTS000000000	SAMEA114450515	Cardiobacterium hominis
GCA_963554265.1	CAUVRK000000000	SAMEA114450477	Corynebacterium durum
GCA_963554475.1	CAUVSC000000000	SAMEA114450560	Corynebacterium matruchotii
GCA_963554995.1	CAUVUJ000000000	SAMEA114450569	Gemella morbillorum
GCA_963554855.1	CAUVTJ000000000	SAMEA114450595	Granulicatella elegans
GCA_963554255.1	CAUVRP000000000	SAMEA114450548	Haemophilus haemolyticus
GCA_963554145.1	CAUVRQ000000000	SAMEA114450589	Haemophilus parahaemolyticus
GCA_963555455.1	CAUVVQ000000000	SAMEA114450469	Haemophilus parainfluenzae
GCA_963555375.1	CAUVVT000000000	SAMEA114450464	Haemophilus parainfluenzae
GCA_963554815.1	CAUVSN000000000	SAMEA114450570	Haemophilus parainfluenzae
GCA_963554315.1	CAUVRM000000000	SAMEA114450552	Haemophilus paraphrohaemolyticus
GCA_963554695.1	CAUVUA000000000	SAMEA114450516	Hoylesella loescheii
GCA_963555365.1	CAUVUS000000000	SAMEA114450514	Kingella denitrificans
GCA_963554625.1	CAUVSP000000000	SAMEA114450556	Kingella oralis
GCA_963554155.1	CAUVRV000000000	SAMEA114450479	Lachnoanaerobaculum saburreum
GCA_963554885.1	CAUVTX000000000	SAMEA114450545	Lacticaseibacillus paracasei
GCA_963554725.1	CAUVTF000000000	SAMEA114450493	Lancefieldella parvula
GCA_963554305.1	CAUVQX000000000	SAMEA114450529	Lautropia mirabilis
GCA_963554585.1	CAUVTC000000000	SAMEA114450490	Neisseria cinerea
GCA_963554125.1	CAUVRG000000000	SAMEA114450573	Neisseria elongata
GCA_963555345.1	CAUVVF000000000	SAMEA114450488	Neisseria sicca
GCA_963555285.1	CAUVUQ000000000	SAMEA114450513	Porphyromonas catoniae
GCA_963555495.1	CAUVVU000000000	SAMEA114450537	Prevotella conceptionensis
GCA_963555035.1	CAUVVJ000000000	SAMEA114450591	Prevotella histicola
GCA_963555125.1	CAUVUG000000000	SAMEA114450473	Rothia aeria
GCA_963555005.1	CAUVUD000000000	SAMEA114450521	Rothia dentocariosa
GCA_963554825.1	CAUVSK000000000	SAMEA114450467	Rothia mucilaginosa
GCA_963555415.1	CAUVVS000000000	SAMEA114450463	Rothia mucilaginosa
GCA_963554955.1	CAUVSL000000000	SAMEA114450511	Scardovia wiggsiae
GCA_963554635.1	CAUVTU000000000	SAMEA114450525	Schaalia georgiae
GCA_963554195.1	CAUVRO000000000	SAMEA114450483	Schaalia odontolytica
GCA_963555235.1	CAUVVE000000000	SAMEA114450583	Segatella oulorum
GCA_963555445.1	CAUVVZ000000000	SAMEA114450536	Selenomonas artemidis
GCA_963555465.1	CAUVVP000000000	SAMEA114450541	Selenomonas noxia
GCA_963554975.1	CAUVTL000000000	SAMEA114450594	Stenotrophomonas maltophilia
GCA_963555425.1	CAUVVV000000000	SAMEA114450538	Streptococcus anginosus
GCA_963554795.1	CAUVST000000000	SAMEA114450501	Streptococcus gordonii
GCA_963554835.1	CAUVSR000000000	SAMEA114450465	Streptococcus infantis
GCA_963554915.1	CAUVSQ000000000	SAMEA114450593	Streptococcus mutans
GCA_963554445.1	CAUVRH000000000	SAMEA114450579	Streptococcus oralis
GCA_963554735.1	CAUVSV000000000	SAMEA114450486	Streptococcus oralis
GCA_963555325.1	CAUVUW000000000	SAMEA114450503	Streptococcus oralis
GCA_963555195.1	CAUVUY000000000	SAMEA114450562	Streptococcus oralis
GCA_963555265.1	CAUVUK000000000	SAMEA114450550	Streptococcus salivarius
GCA_963554785.1	CAUVSM000000000	SAMEA114450506	Streptococcus salivarius
GCA_963555155.1	CAUVVB000000000	SAMEA114450546	Streptococcus salivarius
GCA_963554375.1	CAUVRA000000000	SAMEA114450578	Streptococcus sanguinis
GCA_963554275.1	CAUVQZ000000000	SAMEA114450549	Streptococcus sanguinis
GCA_963555025.1	CAUVUC000000000	SAMEA114450531	Streptococcus sobrinus
GCA_963554985.1	CAUVUR000000000	SAMEA114450462	Veillonella infantium
GCA_963554875.1	CAUVSU000000000	SAMEA114450572	Veillonella parvula
GCA_963554745.1	CAUVTH000000000	SAMEA114450575	Veillonella parvula
GCA_963555395.1	CAUVVW000000000	SAMEA114450532	Veillonella parvula
GCA_963554645.1	CAUVTG000000000	SAMEA114450555	uncultured Abiotrophia sp.
GCA_963555075.1	CAUVUF000000000	SAMEA114450470	uncultured Abiotrophia sp.
GCA_963555105.1	CAUVUH000000000	SAMEA114450523	uncultured Actinobaculum sp.
GCA_963555065.1	CAUVVH000000000	SAMEA114450504	uncultured Actinomyces sp.
GCA_963555055.1	CAUVVG000000000	SAMEA114450564	uncultured Actinomyces sp.
GCA_963555275.1	CAUVVC000000000	SAMEA114450512	uncultured Actinomyces sp.
GCA_963554355.1	CAUVRZ000000000	SAMEA114450559	uncultured Actinomyces sp.
GCA_963554705.1	CAUVTK000000000	SAMEA114450517	uncultured Aggregatibacter sp.
GCA_963554435.1	CAUVRU000000000	SAMEA114450582	uncultured Alloprevotella sp.
GCA_963555145.1	CAUVVK000000000	SAMEA114450524	uncultured Alloprevotella sp.
GCA_963555085.1	CAUVUE000000000	SAMEA114450544	uncultured Ancrocorticia sp.
GCA_963554555.1	CAUVTB000000000	SAMEA114450592	uncultured Bergeyella sp.
GCA_963555045.1	CAUVUB000000000	SAMEA114450502	uncultured Candidatus Saccharibacteria bacterium
GCA_963555175.1	CAUVUN000000000	SAMEA114450528	uncultured Candidatus Saccharibacteria bacterium
GCA_963555185.1	CAUVUP000000000	SAMEA114450577	uncultured Candidatus Saccharibacteria bacterium
GCA_963554365.1	CAUVQW000000000	SAMEA114450535	uncultured Candidatus Saccharibacteria bacterium
GCA_963554215.1	CAUVRN000000000	SAMEA114450547	uncultured Candidatus Saccharibacteria bacterium
GCA_963554285.1	CAUVQS000000000	SAMEA114450482	uncultured Candidatus Saccharibacteria bacterium
GCA_963554655.1	CAUVSH000000000	SAMEA114450485	uncultured Candidatus Saccharibacteria bacterium
GCA_963554325.1	CAUVQT000000000	SAMEA114450474	uncultured Candidatus Saccharimonas sp.
GCA_963555135.1	CAUVVI000000000	SAMEA114450542	uncultured Capnocytophaga sp.
GCA_963554105.1	CAUVRE000000000	SAMEA114450534	uncultured Capnocytophaga sp.
GCA_963554525.1	CAUVTM000000000	SAMEA114450475	uncultured Capnocytophaga sp.
GCA_963555385.1	CAUVWA000000000	SAMEA114450543	uncultured Cardiobacterium sp.
GCA_963555435.1	CAUVVX000000000	SAMEA114450471	uncultured Granulicatella sp.
GCA_963554845.1	CAUVSO000000000	SAMEA114450554	uncultured Granulicatella sp.
GCA_963554465.1	CAUVSS000000000	SAMEA114450510	uncultured Kingella sp.
GCA_963554115.1	CAUVRJ000000000	SAMEA114450571	uncultured Micrococcales bacterium
GCA_963554965.1	CAUVSY000000000	SAMEA114450576	uncultured Neisseria sp.
GCA_963555305.1	CAUVVN000000000	SAMEA114450587	uncultured Neisseria sp.
GCA_963554765.1	CAUVTI000000000	SAMEA114450567	uncultured Neisseria sp.
GCA_963554345.1	CAUVRR000000000	SAMEA114450519	uncultured Neisseria sp.
GCA_963554535.1	CAUVSI000000000	SAMEA114450588	uncultured Neisseria sp.
GCA_963554515.1	CAUVSJ000000000	SAMEA114450466	uncultured Neisseria sp.
GCA_963554615.1	CAUVSW000000000	SAMEA114450553	uncultured Ottowia sp.
GCA_963555225.1	CAUVUM000000000	SAMEA114450484	uncultured Porphyromonadaceae bacterium
GCA_963554945.1	CAUVTN000000000	SAMEA114450584	uncultured Porphyromonadaceae bacterium
GCA_963555315.1	CAUVVM000000000	SAMEA114450472	uncultured Porphyromonas sp.
GCA_963554545.1	CAUVSE000000000	SAMEA114450574	uncultured Porphyromonas sp.
GCA_963554865.1	CAUVTT000000000	SAMEA114450563	uncultured Porphyromonas sp.
GCA_963554505.1	CAUVSB000000000	SAMEA114450480	uncultured Porphyromonas sp.
GCA_963554665.1	CAUVSZ000000000	SAMEA114450518	uncultured Porphyromonas sp.
GCA_963555205.1	CAUVVD000000000	SAMEA114450590	uncultured Prevotella sp.
GCA_963554575.1	CAUVTW000000000	SAMEA114450585	uncultured Prevotella sp.
GCA_963554595.1	CAUVTQ000000000	SAMEA114450481	uncultured Prevotella sp.
GCA_963554235.1	CAUVRT000000000	SAMEA114450492	uncultured Prevotella sp.
GCA_963554605.1	CAUVSF000000000	SAMEA114450551	uncultured Prevotellaceae bacterium
GCA_963554715.1	CAUVTA000000000	SAMEA114450566	uncultured Propionibacteriaceae bacterium
GCA_963555165.1	CAUVVA000000000	SAMEA114450522	uncultured Propionibacterium sp.
GCA_963555405.1	CAUVVO000000000	SAMEA114450461	uncultured Rothia sp.
GCA_963554935.1	CAUVTO000000000	SAMEA114450508	uncultured Rothia sp.
GCA_963555245.1	CAUVUL000000000	SAMEA114450491	uncultured Rothia sp.
GCA_963555475.1	CAUVVR000000000	SAMEA114450533	uncultured Selenomonas sp.
GCA_963554895.1	CAUVTP000000000	SAMEA114450565	uncultured Streptococcus sp.
GCA_963554805.1	CAUVSX000000000	SAMEA114450509	uncultured Streptococcus sp.
GCA_963555095.1	CAUVUZ000000000	SAMEA114450568	uncultured Streptococcus sp.
GCA_963554685.1	CAUVTD000000000	SAMEA114450499	uncultured Streptococcus sp.
GCA_963554245.1	CAUVRF000000000	SAMEA114450558	uncultured Streptococcus sp.
GCA_963554225.1	CAUVRD000000000	SAMEA114450476	uncultured Streptococcus sp.
GCA_963554405.1	CAUVRI000000000	SAMEA114450507	uncultured Streptococcus sp.
GCA_963554455.1	CAUVSA000000000	SAMEA114450561	uncultured Tannerella sp.
GCA_963555335.1	CAUVUX000000000	SAMEA114450500	uncultured Veillonella sp.
GCA_963554425.1	CAUVRW000000000	SAMEA114450581	uncultured Veillonella sp.
GCA_963555295.1	CAUVUV000000000	SAMEA114450526	uncultured bacterium
GCA_963554565.1	CAUVTE000000000	SAMEA114450580	uncultured bacterium

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EMG produced TPA metagenomics assembly of PRJNA752888 data set (Longitudinal saliva bacteriome and early childhood caries).

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