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Metagenome-Assembled Genome: SRR15443037_bin.8_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114450521; SRA: ERS16436980
Organism
Rothia dentocariosa
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Rothia
Attributes
broad-scale environmental contexthuman digestive system
collection date2016-12-22
environmental mediumsaliva
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourceoral metagenome
project nameThis study consists of longitudinal saliva samples from children aged 2 months to 5 years from the Center for Oral Health Research in Appalachia 2 study
sample nameSRR15443037_bin.8_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
INSDC center nameEMG
Submitter IdSRR15443037_bin.8_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEBI-EMG
completeness score97.57
completeness softwareCheckM
contamination score0.0
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextoral cavity
metagenomic sourceoral metagenome
sample derived fromSAMN20770741
scientific_nameRothia dentocariosa
sequencing methodIllumina HiSeq 4000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Micrococcales;f__Micrococcaceae;g__Rothia;s__Rothia dentocariosa
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR15443037 of study SRP331553.

BioProject
PRJEB66073
Retrieve all samples from this project

Submission
EBI; 2023-09-29
Accession:
SAMEA114450521
ID:
37602578

BioProject Nucleotide

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