Metagenome-Assembled Genome: SRR15443077_bin.3_Met... - BioSample

Metagenome-Assembled Genome: SRR15443077_bin.3_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114450594; SRA: ERS16437053

Organism: Stenotrophomonas maltophilia
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Stenotrophomonas; Stenotrophomonas maltophilia group

Attributes

broad-scale environmental context	human digestive system
collection date	2016-03-24
environmental medium	saliva
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	oral metagenome
project name	This study consists of longitudinal saliva samples from children aged 2 months to 5 years from the Center for Oral Health Research in Appalachia 2 study
sample name	SRR15443077_bin.3_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
Submitter Id	SRR15443077_bin.3_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EBI-EMG
completeness score	99.66
completeness software	CheckM
contamination score	0.09
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	oral cavity
metagenomic source	oral metagenome
sample derived from	SAMN20770704
scientific_name	Stenotrophomonas maltophilia
sequencing method	Illumina HiSeq 4000
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas;s__Stenotrophomonas maltophilia
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR15443077 of study SRP331553.

BioProject: PRJEB66073
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Submission: EBI; 2023-09-29

Accession:: SAMEA114450594
ID:: 37603170

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Metagenome-Assembled Genome: SRR15443077_bin.3_MetaWRAP_v1.3_MAG

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