| broad-scale environmental context | Pig digestive system |
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| collection date | not provided |
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| environmental medium | Feces |
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| geographic location | USA |
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| investigation type | metagenome-assembled genome |
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| isolation source | pig gut metagenome |
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| project name | Shotgun metagenomic sequencing of fecal samples collected from 18 pregnant sows at days 37 (beginning) and 114 (immediately pre-farrowing) of pregnancy reveal that parity is associated with changes in the porcine gut microbiome at the end, and not the beginning, of pregnancy. Shotgun metagenomic sequencing of fecal swabs from 3 offspring from each mother 10 days after birth reveals that maternal parity is associated with the early infant gut microbiome composition. |
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| sample name | SRR12203254_bin.3_metaWRAP_v1.3_MAG |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2022-07-28 |
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| ENA-LAST-UPDATE | 2022-07-28 |
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| External Id | SAMEA110426328 |
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| INSDC center alias | EMG |
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| INSDC center name | EMG |
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| INSDC first public | 2022-07-28T16:25:46Z |
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| INSDC last update | 2022-07-28T16:25:46Z |
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| INSDC status | public |
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| Submitter Id | SRR12203254_bin.3_metaWRAP_v1.3_MAG |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | megahit v1.2.9 |
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| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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| binning software | metaWRAP v1.3 |
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| broker name | EMG broker account, EMBL-EBI |
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| completeness score | 66.25 |
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| completeness software | CheckM |
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| contamination score | 4.95 |
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| geographic location (latitude) | 39.8687 |
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| geographic location (longitude) | -75.7547 |
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| local environmental context | Intestine |
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| metagenomic source | pig gut metagenome |
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| sample derived from | SAMN15497254 |
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| sequencing method | NextSeq 500 |
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| taxonomic classification | The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus crispatus |
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| taxonomic identity marker | multi-marker approach |
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