| broad-scale environmental context | mouse digestive system |
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| collection date | 2018-04-19 |
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| environmental medium | feces |
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| geographic location | USA |
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| investigation type | metagenome-assembled genome |
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| isolation source | mouse gut metagenome |
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| project name | In this study, we sought to investigate the hypothesis that dietary nicotinamide riboside supplementation alters the murine gut microbiome to mediate diet-induced weight gain deflection. To test this hypothesis, we fed C57BL6J males a high-fat diet supplemented with or without NR and then performed a fecal material transplant into naive recipients. |
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| sample name | SRR13827506_bin.20_metawrap_v1.3_MAG |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2022-10-21 |
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| ENA-LAST-UPDATE | 2022-10-21 |
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| External Id | SAMEA111497057 |
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| INSDC center alias | EMG |
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| INSDC center name | EMG |
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| INSDC first public | 2022-10-21T12:25:30Z |
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| INSDC last update | 2022-10-21T12:25:30Z |
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| INSDC status | public |
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| Submitter Id | SRR13827506_bin.20_metawrap_v1.3_MAG |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | metaSPAdes v3.15.3 |
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| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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| binning software | metawrap v1.3 |
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| broker name | EMG broker account, EMBL-EBI |
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| completeness score | 99.41 |
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| completeness software | CheckM |
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| contamination score | 0.57 |
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| geographic location (latitude) | 43.043 |
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| geographic location (longitude) | -88.0221 |
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| local environmental context | digestive tube |
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| metagenomic source | mouse gut metagenome |
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| sample derived from | SAMN18043937 |
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| sequencing method | Illumina NovaSeq 6000 |
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| taxonomic classification | The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides thetaiotaomicron |
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| taxonomic identity marker | multi-marker approach |
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