Metagenome-Assembled Genome: SRR3968063_bin.9_Meta... - BioSample

Metagenome-Assembled Genome: SRR3968063_bin.9_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA112958189; SRA: ERS14953610

Organism: uncultured Pseudoalteromonas sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas; environmental samples

Attributes

broad-scale environmental context	Aquatic
collection date	2010-12-28
environmental medium	Deep Atlantic Ocean
geographic location	Atlantic Ocean
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Marine microbial communities from the Deep Atlantic Ocean - MP0203 metagenome
sample name	SRR3968063_bin.9_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-04-24
ENA-LAST-UPDATE	2023-04-24
External Id	SAMEA112958189
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2023-04-24T16:16:28Z
INSDC last update	2023-04-24T16:16:28Z
INSDC status	public
Submitter Id	SRR3968063_bin.9_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	94.59
completeness software	CheckM
contamination score	2.6
geographic location (latitude)	7.33
geographic location (longitude)	-26.0
local environmental context	Marine
metagenomic source	marine metagenome
sample derived from	SAMN05421660
scientific_name	uncultured Pseudoalteromonas sp.
sequencing method	Illumina HiSeq 2000
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Alteromonadales;f__Pseudoalteromonadaceae;g__Pseudoalteromonas;s__
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenome-assembled genome assembled from the metagenomic run SRR3968063 of study SRP080082.

BioProject: PRJEB26202
Retrieve all samples from this project

Submission: EBI; 2023-04-29

Accession:: SAMEA112958189
ID:: 34438261

BioProject Nucleotide

BioSample

National Center for Biotechnology Information

Result Filters

Send to:

Links from Nucleotide

Metagenome-Assembled Genome: SRR3968063_bin.9_MetaWRAP_v1.3_MAG

Supplemental Content

Related information

Recent activity