From: NCBI PubChem BioAssay Database
The NCBI Handbook [Internet]. 2nd edition.
Bethesda (MD): National Center for Biotechnology Information (US); 2013-.
NCBI Bookshelf. A service of the National Library of Medicine, National Institutes of Health.
Table 1.
A list of Web-based PubChem services for the BioAssay resource
| Service | Description | URL example |
|---|---|---|
| BioActivity Analysis Services | Home page for bioactivity data analysis services |
http://pubchem |
| BioAssay Summary | BioAssay summary page for a given AID |
http://pubchem |
| BioAssay Data Table (concise view) | Concise data table for a given AID. The table includes SID,CID, structure, bioactivity outcome, score, and active concentration value if available | http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?p=datatable http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?q=r&aid=myAID |
| BioAssay Data Table (complete view) | Complete data table for given AID, including all deposited test results | http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?p=datatable http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?q=r&resultsummary=detail&aid=myAID |
| BioAssay Test Results Selection | Select/search BioAssay test results |
http://pubchem |
| BioAssay Search | Search BioAssay Database with Entrez |
http://www |
| BioAssay Search, Limits page | An interface for constructing an Entrez query | http://www.ncbi.nlm.nih.gov/pcassay/limits |
| BioAssay Search, Advanced Page | An interface for reviewing search history and combining search results | http://www.ncbi.nlm.nih.gov/pcassay/advanced |
| PubChem Upload System | Chemical structure and BioAssay submission tool | http://pubchem.ncbi.nlm.nih.gov/upload/#welcome |
| BioActivity Summary - Assay-centric | BioActivity Summary presented from the assay point of view | http://pubchem.ncbi.nlm.nih.gov/assay/bioactivity.cgi |
| BioActivity Summary - Compound-centric | BioActivity Summary presented from the compound point of view | http://pubchem.ncbi.nlm.nih.gov/assay/bioactivity.cgi |
| BioActivity Summary - Target-centric | BioActivity Summary presented from the target point of view | http://pubchem.ncbi.nlm.nih.gov/assay/bioactivity.cgi |
| BioActivity Summary | BioActivity information for a single SID,CID, GI, GeneID | http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?sid=mySID http://pubchem.ncbi.nlm.nih.gov/assay/assay/cgi?cid=myCID http://pubchem.ncbi.nlm.nih.gov/assay/assay/cgi?cid=myGI http://pubchem.ncbi.nlm.nih.gov/assay/assay/cgi?cid=myGeneID |
| Structure-Activity Analysis (SAR) | Structure-Activity relationship analysis and visualization in a heatmap-style display. | http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?p=heat |
| Related BioAssays | Related BioAssays by: Activity Overlap, Target Similarity, Deposited Annotation, Same Publication, or Common BioSystems. | http://pubchem.ncbi.nlm.nih.gov/assay/assayHeatmap.cgi?service=assayneighbor&aid=myAID |
| Scatter Plot/Histogram | BioAssay test results plotting functions | http://pubchem.ncbi.nlm.nih.gov/assay/plot.cgi?plottype=2 |
| Dose-response curve | Draw dose-response curves for confirmatory assays containing dose-response data points |
http://pubchem |
| BioAssay download | Assay data download service | http://pubchem http://pubchem ftp://ftp.ncbi.nlm.nih.gov/pubchem/BioAssay/ |