| Featurea | Coordinate systemb | Representative mapsc |
|---|---|---|
| STS | Sequence (Mb), Radiation hybrid (cRay), Genetic (cM), Clone content (ordinal), Cytogenetic | STS, STSnw, G3, GM4, GeneMap'99, TNG, Marshfield, Genethon, deCode, Whitehead YAC, phenotype maps such as Quantitative Trait Loci (QTL) |
| Clones | Sequence, Cytogenetic | Clone, BES, Components |
| Expression | Sequence | SAGE tag, UniGene |
| Genes | Sequence (Mb), Cytogenetic (band names) | Genes_seq, Genes_cyto |
| Gene-related | Sequence, Cytogenetic | UniGene, GenomeScan, Mitelman recurrent breakpoint, morbid |
| Variation | Sequence (Mb) | Variation |
| Published accessions | Sequence (Mb) | GenBank |
| Phenotype | Cytogenetic, Cytogenetic (abnormalities), Sequence | OMIM's morbid map, Mitelman's recurrent breakpoint, QTL (in progress) |
| Source clones | Sequence (Mb) | Component |
| Homology | Sequence (Mb) | Indirectly via LocusLink or UniGene. For mouse and human, through the homology (hm) link to the mouse–human homology map |
The feature column lists the types of objects annotated on maps seen in Map Viewer. Those features in bold type are annotated on the RefSeqs; the rest are provided only from the Map Viewer, and the files are available for FTP transfer.
The different map types and coordinate systems that may contain a particular type of feature.
A partial enumeration of named maps that represents positions of this feature type.
From: Chapter 20, Using the Map Viewer to Explore Genomes
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