| Map Viewers | |
| Ensembl | www.ensembl.org |
| NCBI MapViewer | www.ncbi.nlm.nih.gov/mapview |
| UCSC Genome Browser | www. genome.ucsc.edu |
| Sequencing Information | |
| NHGRI Sequencing Information | www.nhgri.nih.gov/Data/ |
| Celera Genomics | www.celera.com |
| Analysis tools | |
| BLAT | http://genome.ucsc.edu/cgi-bin/hgBlat?command=start |
| BLAST | http://www.ncbi.nlm.nih.gov/BLAST/ |
| e-PCR | http://www.ncbi.nlm.nih.gov/ sts/epcr.cgi |
| Sim4 (mRNA to genomic alignment tool) | http://globin.cse.psu.edu/ |
| Spidey (mRNA to genomic alignment tool) | http://www.ncbi.nlm.nih.gov/spidey |
| SSAHA | http://www.sanger.ac.uk/Software/analysis/SSAHA/ |
| RepeatMasker | http://repeatmasker.genome.washington.edu/cgi-bin/RepeatMasker |
| Maps | |
| BAC FingerPrint Map | http://genome.wustl.edu/gsc/human/Mapping/ |
| Other Annotation Sources and Viewers | |
| Celera Genomics | http://www.celera.com |
| DAS | http://www.biodas.org |
| DoubleTwist | http://www.doubletwist.com |
| The Genome Channel | http://compbio.ornl.gov/channel/ |
| Incyte Genomics | http://www.incyte.com |
| FTP Sites | |
| Ensembl | ftp.ensembl.org/pub/current/data/ |
| NCBI | ftp.ncbi.nlm.nih.nih.gov/genomes/H_sapiens/ |
| UCSC | ftp.genome.cse.ucsc.edu/goldenPath |
From: Chapter 20, Using the Map Viewer to Explore Genomes
NCBI Bookshelf. A service of the National Library of Medicine, National Institutes of Health.