Conserved Protein Domain Family
HTH_Tnp_Tc3_2
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pfam01498: HTH_Tnp_Tc3_2 
Transposase
Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of C.elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in. Tc3 is a member of the Tc1/mariner family of transposable elements.
Links
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Statistics
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PSSM-Id: 366677
Aligned: 24 rows
Threshold Bit Score: 59.5582
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
EDN03566  82 KDAILAKVQHDRYgreKSCTDLANEFSNE-GIEISSMTIWRILRKAGLRKTKPTWKPGLTKKMWLDRLQFCLEHKD 156 
Q16925    69 RRAIKRLVDAEPE---ISAQSVAIVLNERhGIAISCETVRRYIHKFGYKAYNRRKKPQISPINRKRRLEFAKKYVN 141  Anopheles albimanus
Q9C1K3    69 RRRILRVIAQDPH---IQIRELIEEA----GLSCCRATLISYLRKEGIMHYKSLLRPFLSEDNARKRLRFARRYVH 137  [Nectria] haematococca
Q86PR2    69 CRRLIGIVDKNPS---ISPVKLSAHSQQLiGKKVCDATIRRRLKEIDIRTYTVRKIIEISEANKAKRLSFALEYVK 141  Drosophila pseudoobscura
Q24258    69 CRQILGVVAKNPS---ASPVKIALESKNTiGKQVSSSTIRRRLKEADFKTYVVRKTIEITPTNKTKRLRFALEYVK 141  fruit fly
Q877B0    80 KRYIYLLARRRPK---IGYKALIASS----GFSISHSTIKRVLRTFQLKKWKAKKRIPLRPDVAKKRLQFARTWAN 148  Aspergillus oryzae
Q2GP59    84 KRYIVLLVKKNRT---IAKKALVNAT----GKVVSYSTIRRCLRSHHIRKWRAMKRIPLTKEVAKDRYNFACDWLE 152  Chaetomium globosum CB...
CAP09075  70 KRQLAKIVKADRR---QSLRNLASKWSQTiGKTVKREWTRQQLKSIGYGFYKAKEKPLLTLRQKKKRLQWARERMS 142 
Q2GTJ0    79 KDEVIQKVRANRHgreMTCAFISEEL----GHVISPMTVWRILRAAGMKKTKPTRKPGLTEKMRRDRFEFCLLHRD 150  Chaetomium globosum CB...
ABV31711  45 DRYLRLCARRSRR---STARALQNDLQQAtNVHVSAQTVRNRLHDGGMRARRPQVGVVLTAQHRAGRLAFAREHQD 117
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