Conserved Protein Domain Family
HlyD_D23

?
pfam16576: HlyD_D23 
Barrel-sandwich domain of CusB or HlyD membrane-fusion
HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.
Statistics
?
PSSM-Id: 435440
Aligned: 124 rows
Threshold Bit Score: 205.048
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q1LFT8            59 PFSEMLRVAGRIDFDEQRVSRIGASVTGRVTDLYAV-LGQEVKAGQVLARLHSSELGAAQMAFLKAEAqntlqarnaera 137 Cupriavidus...
WP_015898523      94 EISNHLQVPGNVAIDEERLSYVQTRFPGWIQKVFANaTWQYVKKGEPLFTIYSPDLVSTEQEYLLAKQ------------ 161 Acidobacter...
WP_015896353     109 NLDNDVRATGNVDIDQRLISYVQVRFPGYIRKVFVNaVYQYVHKGEPLFTVYSPDLVATEQEYLLARQ------------ 176 Acidobacter...
WP_014959960      67 RLVRTISRTGTLNFDEEKVSVLAARLSGR-EVKILAfEGQHVFRDDPLALVYSPDFVTAEAEYLNAFK------------ 133 Leptospirillum
Q1IUJ7            68 ALTRSLRLTGAVAYNSFHTTPVITQVSGPVSRVVVV-PGQNVHQGEPMLYVASPDFSQLRTNYLKAKDayalsqkafara 146 Candidatus ...
Q2YA06            60 NIADKLQAPSQVEVDEHRLVRVGANVTGRIIDVYAM-LGDNVEAGAELARISSPELTQAQLAYLRAFSletlaekaaera 138 Nitrosospir...
WP_013248356      59 PIQPELVLVGKVAYGEDRYSKISSPLQGRVVEVRAK-LGDRVEAGATLLVIDSSDITAAYSEFVKEASeleystraqela 137 Nitrospira ...
jgi:CAP2UW1_4547 113 EVSEPLTLTATIRPNQDRIAHVAPRVPGRIVNVKTN-LGDQVKAGQTLAVLDSLEVGDAYSAYLQAATqqsvakadfera 191
XP_002535911      76 PIQDQLSFTANILANQNKLAHVTPRIEGKLSKVIAN-LGDHVKTGQTLAEIDSVPMGEARAQFRSSKTdltlaqanfdri 154
WP_012468621      75 RLAGVISATGKVDVNSDRIAHVSPRISGKIVSVRSS-LGDQVSAGQVLVTLDSVELGEALNRYHQSKTklalaqssmdri 153 Geobacter l...
Q1LFT8           138 rqlfAADVIGRAElqrreseyaiaaaEARAYRDQLRVLGMSAASIATLAKSGSIESYSPVFSSINGTVVERNVAQGQVV- 216 Cupriavidus...
WP_015898523     162 ----NQKSLRPGGkgtas---qegtwLLDAAEQRLRQFDVPQNEITELIQSGRVQREIPVDAPASGYITDRNALPNAYV- 233 Acidobacter...
WP_015896353     177 ----GQRAMRASTvdgva---agaasLTTAAEQRLGQWQIPHRELQQLKSSGKVITNLTIDSPASGYVTNYNALPNMYI- 248 Acidobacter...
WP_014959960     134 ----VARTIGSRNea---------etYIRAAAKKLLLMGATEKDLDALSRTQKIAPYLTIHAPRDGIILNSQLREGLFM- 199 Leptospirillum
Q1IUJ7           147 kdlyDHHAISEQNleqaesaevqaggDLVAAQSALKVLGITDPD--ELVRTAPTFE-VPVKAPISGLVVEQNVAVGQLI- 222 Candidatus ...
Q2YA06           139 rhllAADVISVAEmqrreselqvsqaELGAAADQLRLLGMGSRAINKLGKEGTIMPSVAIKTSKPGTVIERNVAIGQVV- 217 Nitrosospir...
WP_013248356     138 kelfATKALALKDlkqaendlikaraEFRRAKERLLSLRIPAQELEKPLAQQRITSRFEMKSPLTGTVVERAVTPGQSVg 217 Nitrospira ...
jgi:CAP2UW1_4547 192 eklhGDQIIAQKDhlrahaeyekskaALAAARDRLRMLGVD----ASPTGDGKARSTFPVSTPFAGTVIEKHAILGELS- 266
XP_002535911     155 sklyEDKVVPQKQfiesqsaleraksALYADSERLRMYG---------GLDQQSGSTYLLKAPFNGIVIEKNAVIGELA- 224
WP_012468621     154 kllvDKKIAARKDillaetefktaqtELHTDEERLALYGVS---LADLTNTRHRSPLLPVRSPISGIITEKHAIVGELA- 229 Geobacter l...
Q1LFT8           217 -QPADA-LYTVADLSRVWVVAEVPEQQAAQVAEGQSVDIEVPSLANSngRITGKLIYVGRTVNPQSRTVLVRTELQNKDG 294 Cupriavidus...
WP_015898523     234 -QPDTK-LYTIADLSTVWVYANVFQTDVGELRPGDPAQVTVDAYPGR--TFYGRIDQILPDVDPVTRTARVRLVFRNPGV 309 Acidobacter...
WP_015896353     249 -DPSTR-LYTVADLSRVWVYAQVFQDDAGRLKPGDPVEITVDAYPGR--IFYGRIDQILPQVNLATRTVPVRVIVQNPGI 324 Acidobacter...
WP_014959960     200 -NPGDQ-LLTIADLSKLWVYMDIYEGDLPLVHIGQTILVKTVAYPGE--IFRGHIIYQGGMVDPQTRTFHVRGEIENPDH 275 Leptospirillum
Q1IUJ7           223 -QPGSTqCFTISDVSTVWVLVNVYQKDLPYVRVGDTVEIQTDAYPD---VFHGRISYIAASLDPNTRTLQARIETNNPGG 298 Candidatus ...
Q2YA06           218 -QPSDL-LFQVADLSSVWVVGDVPEQIARDVQVGQHVEIHVPALGNI--SFDGLIIFVADTVNPLTRTVMVRTVVENPRR 293 Nitrosospir...
WP_013248356     218 sDAGQV-LFTVADLDRLQVVADVYERDLALVKVSQVGRINVEAYPGT--DFASVVASIGDVVDPNTRTIKVRAWVDNRDQ 294 Nitrospira ...
jgi:CAP2UW1_4547 267 -QPDSP-LFVVADLSKLWIAADLFEKDLGRIQVGASAIVTVAAYPDE--SFEGTLTYIAAVVDKETRTVQARVEVTNLDG 342
XP_002535911     225 -NPADT-IFTIADMSTVWIDADVPERDLQYLEVGKTASVTVTAYPDE--VFNGKVSYLSSVVDKTTRTVKARIELPNTEQ 300
WP_012468621     230 -DPSKN-LFTIADLSSVWIMVDINEKDLAKIHRGQIASVSVSAFPDL--KLQGRITYIADLVDQNTRTVKARIEVANLQR 305 Geobacter l...
Q1LFT8           295 RLKPAMLA 302 Cupriavidus metallidurans CH34
WP_015898523     310 VLKPGMYV 317 Acidobacterium capsulatum
WP_015896353     325 ILKPGMYV 332 Acidobacterium capsulatum
WP_014959960     276 RLKPGMFA 283 Leptospirillum
Q1IUJ7           299 KLKKDMYV 306 Candidatus Koribacter versatilis Ellin345
Q2YA06           294 KLKPAMLA 301 Nitrosospira multiformis ATCC 25196
WP_013248356     295 RLKPEMFA 302 Nitrospira defluvii
jgi:CAP2UW1_4547 343 RLKPEMFA 350
XP_002535911     301 KLRIDMFA 308
WP_012468621     306 KLKPEMFA 313 Geobacter lovleyi
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap