2V7Q,2HLD,2JDI,2QE7,2XOK,3OAA,3OE7


Conserved Protein Domain Family
F1-ATPase_gamma

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cd12151: F1-ATPase_gamma 
Click on image for an interactive view with Cn3D
mitochondrial ATP synthase gamma subunit
The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain of F-ATPases is composed of alpha, beta, gamma, delta, and epsilon (not present in bacteria) subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain.
Statistics
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PSSM-Id: 213394
Aligned: 206 rows
Threshold Bit Score: 161.591
Created: 6-Sep-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 38 residues -Click on image for an interactive view with Cn3D
Feature 1:core domain interface [polypeptide binding site]
Evidence:
  • Structure:2XOK; Yeast F1C10 ATPase complex, contacts at 4A
  • Comment:interaction of gamma subunit with alpha beta hexamer

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #    #     #   #  ## ##  ##                                                  
2V7Q_G         1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALyekadik----------tpedkkkHLIIG 70  cattle
2XOK_G        34 ATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFyknaetknld----veatetgapkELIVA 109 baker's yeast
YP_001531792   3 QTLERLTGRTETMRGIRSIVRTMKTMSAINALPYEQAADAIEAYRDTAILGfrafvrshgp----lprdaatagqPVVIA 78  Dinoroseobacter...
ZP_07203404    2 QTLESLNRKIKTARDLLGVVKTMKSLAAVNIRQFEGAVESLEEYRSVVDLGwtvfmrmgrp-----avyppknegNVCLV 76  delta proteobac...
YP_003907009   3 GKLAEIEARNATARQLDAVIGAMRGIAAARSREAQRRLPGIRSSAATVGAAigavlahgrpe--palqthsdlraRIVIA 80  Burkholderia sp...
CBX31018       2 QSLEVIKNKISGTESLRSIVRTMKILAAVSIRQHEKKLNSLQAYGNTIELGlqvvlksvntk---eekrlpvqdkLGAII 78  uncultured Desu...
YP_004194726   2 ATLESLVRKMKSVDDLQSIVRTMKAMAAANLRQYERAVESLQDYHHTVALGlqivlkgngakrmppialprkkgaLLAVV 81  Desulfobulbus p...
YP_005041012   3 ERLAEVEARRASVQDLEAVTDVMRSLAAMRLQQALGTLAGTRAYAEVIAGAlaqaaalldda--pqqwpvnghghCAWVL 80  Azospirillum li...
YP_005050754   1 MTIQALERKIKTATELLSVVKTMKAMASVNIRTYERAVGSLAEYGRTINLAwlvfflragg-----fplveakgpAVVLA 75  Desulfovibrio a...
ZP_10168350    2 QQLEAVRKKIGTNSDLLSVVKTMKALAAVNIRHFETAAKGVGEYAEVIEQGwtvffrnagi-----lpqgpkvgvAVVLA 76  Desulfobacter p...
Feature 1            # ####                             ##  ##  #                                
2V7Q_G        71 VSSDRGLCGAIHSSVAKQMKseaanlaaagkeVKIIGVGDKiRSILHRth-----sdQFLVTFKEVGrr-pPTFGDASVI 144 cattle
2XOK_G       110 ITSDKGLCGSIHSQLAKAVRrhln----dqpnADIVTIGDKiKMQLLRth-----pnNIKLSINGIGkd-aPTFQESALI 179 baker's yeast
YP_001531792  79 FGSDHGLCGNYNELVAQQVDrtrr----tdveTTVICVGAQmEDALAGlgi---vpaTTLLPPANADgl-gRLAGRLIAL 150 Dinoroseobacter...
ZP_07203404   77 VGSDQGMCGQFNESIWPFLQeqvkaetasdgkWNYWSVGEKiHGMLADagvp--ndvHFPAPGSLNAvi-qRVQETIAMV 153 delta proteobac...
YP_003907009  81 LCSEQGFVGAFNERILDYVQnrta-----haqSELMLVGTRgELLANErhc----avVWNSPAASHAddvlSLAGRITDA 151 Burkholderia sp...
CBX31018      79 FGSDMGLCGQFNEQMAAFATdsig-----tekALIMTVGEKvLAKLDGvw------dWLPFPATLSAgvesVLRNLLDRI 147 uncultured Desu...
YP_004194726  82 IGTDYGFAGQFNEEIIRYALhvlsh--dhhsgCHVIAVGAQiAAGLTAlqrv--iaaSYPLPSSLAGvn-pLVQRLLLEI 156 Desulfobulbus p...
YP_005041012  81 FAPEHGFVGAFAEKLVDAALaap-------paCALWVAGSRgAALLEErgrppawatAMATNTDAVTat-aRRIAEALYQ 152 Azospirillum li...
YP_005050754  76 IGSDQGMCGQFNEVILQEIErrepdlrkdgedVSYWVSGERvLGGLVDsgrd--vrmHFQLPGSLSAvd-tEVMAIIEHM 152 Desulfovibrio a...
ZP_10168350   77 IGSDQGMCGQFNELARAEAVsvieelrvaghkVICWTCGDRlRGALEDcgvk--vdlNFRVPGSLRGvd-aIVDEIEQNL 153 Desulfobacter p...
Feature 1                                                                                        
2V7Q_G       145 ALELlnsg--yefdEGSIIFNRFrsv-isYKTEEKPIFsldtissaes---------msiyddidadVLRNYQEYSLANI 212 cattle
2XOK_G       180 ADKLlsvmkagtypKISIFYNDPvss-lsFEPSEKPIFnaktieqspsf--------gkfeidtdanVPRDLFEYTLANQ 250 baker's yeast
YP_001531792 151 LDEIraaqp-dgqiNVTLVFTQRaeh-gqQSPVSRRLLpldpeltdgfarqpwrsrslprftlapeqLLAALIRSFLFAE 228 Dinoroseobacter...
ZP_07203404  154 EERRssk----tleTLYLCHHVVgdq-ggYAPVFQKVLpldaswahehasttwpnrclpmlgasrdtMFAHLFRQYLFIS 228 delta proteobac...
YP_003907009 152 LYQRlatr---aidSVSLVHALPgga-lsGEVVEHQLIpfdfsrfnaher-----slppllnlpverLLAGLVESYVFVE 222 Burkholderia sp...
CBX31018     148 DIWRtak----gvdRVALFYNRLipeslsYEPVKVMLLpvdedyleglrkkkwrsrsipmfkmpkeeLFAVLIKNLLYVS 223 uncultured Desu...
YP_004194726 157 ERIKadq----dieEVVLLFNRPaaa-ttYAQEKIRLFpvlmddlqsktgkw-psrsipisaiaheqMLRALVREYIYVN 230 Desulfobulbus p...
YP_005041012 153 AAADgr------lgRVELLYGRTnag-apPELVRRPLLplglprdgart-------vpplinmpprdLIARLVDEYVFAL 218 Azospirillum li...
YP_005050754 153 DRQRreq----giqRFYLLNNRPakg-saYESRLRKLLpldkewaarfeqrtwperslpqinmapkdFFGHLFSQYLFIS 227 Desulfovibrio a...
ZP_10168350  154 ELWRtkh----gmnRFSIVNNLHvs--ddAKVAARHILpldkrsgsmkwdg----kslpmtncpvqdLFSNLFSEYLYIS 223 Desulfobacter p...
Feature 1                              #  ##  #     #  ## ##  ##  # ######
2V7Q_G       213 IYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGA 269 cattle
2XOK_G       251 MLTAMAQGYAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGA 307 baker's yeast
YP_001531792 229 IFRAAAEAMVTENAARLARMQQAERSVDERLEELTAEMRSVRQSEITTELLDVIIGF 285 Dinoroseobacter shibae DFL 12
ZP_07203404  229 FYRAFAQSLAGENAARLMAMQAAEKNIIELQDDLQARFREQRQAAITSELLDIISGF 285 delta proteobacterium NaphS2
YP_003907009 223 ICEALMLSFAAENEARMRAMLAARANVRDRLDELTQSYRRVRQDEITDDIVELAAGG 279 Burkholderia sp. CCGE1003
CBX31018     224 LYRAFVESLAAESAARLTSMEAAEKHIDERIKNLNELYNSERQDAITSELLDIIAGY 280 uncultured Desulfobacterium sp.
YP_004194726 231 IFRSIALSMAGENASRLAAMHAAVKKIEEVSDALTMEYRQNRQNAITGELLDIISGF 287 Desulfobulbus propionicus DSM 2032
YP_005041012 219 LADAAMESFAAENAARLSTMMTARHNIETTLDELTATARHLRQEQVTNELIELVSGA 275 Azospirillum lipoferum 4B
YP_005050754 228 LYRAFGQSLASENAARLSSMQSAEKNIDEMKDRLTMEYRQARQTQITGELMDVVSGF 284 Desulfovibrio africanus str. Walvis Bay
ZP_10168350  224 VYGAIVQSLAAENSSRLAAMQVAEKNIIEHIEVLESEFRTTRQGAITGELLDIVSGA 280 Desulfobacter postgatei 2ac9

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