Conserved Protein Domain Family
CpG_bind_C

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pfam12269: CpG_bind_C 
CpG binding protein C-terminal domain
CpG-binding protein is a transcriptional activator that exhibits a DNA binding specificity for unmethylated CpG motifs. CpG is made of a PHD1, an acidic, a basic, a coiled-coil, and a PHD2 domains. This protein contains three cysteine-rich domains identified at the N-terminal, central region and C-terminal of the protein, where the central cysteine-rich domain is located within the DNA-binding domain, found between PHD1 and the acidic domains. This domain is found in eukaryotes, and is approximately 240 amino acids in length. It is found at the C-terminal of the CpG-binding protein containing the coiled-coil and PHD2 domains.
Statistics
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PSSM-Id: 463514
Aligned: 22 rows
Threshold Bit Score: 278.031
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EGT48562     133 ARLRLVEHLPKRVAEHFGDgPAgp-rTLEAEIIEKQVKVREEFKQTTEKESVLIAFLQKLDTFVANQVDLkPLGTEE--- 208
ESO02740     340 ATNRIFEILPRRILEWQST-PC----IAEQNNMKLLDKIRYKQLQAKEQLLELEQKRRKLDEIIMIGKRG-TVLNADeev 413
Q9XUE7       186 ARMRLTEILPNRCKQYFFEgPSggprSLEDEIKPKRAKINREVQKLTESEKNMMAFLNKLVEFIKTQLKLqPLGTEE--- 262 Caenorhabditis ...
EDV24137     277 AKERILRVLPNKIKTLRTQ-GL----TADIQGELKIKELERKRKIAEKRLAELDEMSAKLDHFVNWTKMS-SASLEPdan 350
XP_001624861 279 AVRRIQEILPKRMKQWNRE-PC----EADERANEALQKVLKKKQEAQDMLLELDRMSQALESIIQKGEKL-TAIPEEsqe 352
NP_001071905 139 ARNRLLQILPQRIQEWNGT-PT----VANDNGRQELDRIRKRMINARTELQALEQKFHRLETIISTGRSL-TVVEKLdnd 212
1_pfamImport   1 AASRIYEILPRRIQEWQRS-PC----VAEEWEKKLLKEIRKEQREAWLHVRDAERRFQELEDVILQAKRQ-VVQENGenn 74 
NP_001073166 404 AANRIYEILPQRIQQWQQS-PC----IAEEHGKKLLERIRREQQSARTRLQEMERRFHELEAIILRAKQQ-AVREDEenn 477
XP_002405094 167 ATNRIYELVPHRIQQWQSS-SC----HADETSRRQLEQIRKQQLDARNTLQLLEARRTQLEALIERAKQT-PLIEDEeta 240
XP_025017496 207 ATNRIIEILPERIRFWQST-SS----SADVFSNRELDAIRTEGETAKRLLEELDGKQKELEAMIAEAKKL-PPISEDev- 279
EGT48562     209 ----RLDDTVSYACLICANnDIPLSKYVKHIELCWARSERAMSFGAPEKNNDK-----IYCEYKEEKTGSYCKRLKSLCP 279
ESO02740     414 --dqDDDSDLSTFCITCGH-ELAQKGALRHMEKCFNKFESQTSFGSIYKTRIEgd--pMFCDFYNPHQKTYCKRLKVLCP 488
Q9XUE7       263 ----RYDDNLYEGCIVCGLpDIPLLKYTKHIELCWARSEKAISFGAPEKNNDM-----FYCEKYDSRTNSFCKRLKSLCP 333 Caenorhabditis ...
EDV24137     351 -edgNEDTDLQIYCVTCGH-SIPPRNAIKHMEKCYIKEESLTSYGSKYATNVGpnevsLFCDEYNAQQGTYCKRLRVLCA 428
XP_001624861 353 -admDTDTDLQIHCVTCGL-LLAPRVALRHMEKCYMKNESLTMFGSAYKSAGT-----LFCDYFNAQQGIYCKRLRVLCP 425
NP_001071905 213 -desEGEMDQSIYCVVCGH-SVSIRNAIKHMDKCYIKIESQMSFGSVYPTRIEgs-qrLFCDVYNEQQQTYCKRLQVLCP 289
1_pfamImport  75 nkrySKHSEHQIFCVSCGH-SVNSQVALRHMERCYAKYESQMIFGSLEPTRIEgv-srLFCQVYSPQSKTYCKRLKVLCP 152
NP_001073166 478 -endSDDTDLQIFCVSCGH-PINPRVALRHMERCYAKYESQTSFGSMYPTRIEga-trLFCDVYNPQSKTYCKRLQVLCP 554
XP_002405094 241 --ddYEESELSTYCVTCGH-EVSARSAMRHMEKCFNKYESQSSYGSIYKTRIEgd--nVFCDFYNPHQKTYCKRLRILCP 315
XP_025017496 280 --deETGDELMTYCVTCGH-EVASRTALRHMERCFNKFESQISFGGVYKTKVEg----VFCDVFNPHQKTYCMRLKVLCP 352
EGT48562     280 EHRKPGVEQHLMVCGYPKkwidm------fgtsTYtGTFselialeDPFGDEgCRTLKEVCSMHLKWIPSIRGCIELEQA 353
ESO02740     489 EHTKEPRAPENEVCGCPL---------------VS-NVF-------EPNGEF-CRVSKRKCVKHHCWEKLRKAQIDMERL 544
Q9XUE7       334 EHRKLGDEQHLKVCGYPKkwedgmietaktvseLI-EME-------DPFGEEgCRTKKDACHKHHKWIPSLRGTIELEQA 405 Caenorhabditis ...
EDV24137     429 EHTKEPKIPANEVCGCPL---------------TR-NVF-------EETDDF-CRVRKRSCIKHYRWERLQRANIDRERI 484
XP_001624861 426 EHTKEPKIPQTAVCGCPL---------------VT-NVF-------EETDKI-CSAPKRTCMKHYRWDKLRRAEIDLQRV 481
NP_001071905 290 EHTKEPKVPETEVCGCPL---------------TC-DIYgte--lpTKPNHF-CRAAKRKCTRHFKWETMYRAEVDLQRI 350
1_pfamImport 153 EHSREPKAPADEVCGCPL---------------VR-NVF-------ELTGDF-CRLPKRQCNQHYCWEKLHRAEVDLEQL 208
NP_001073166 555 EHSRDPKVPADEVCGCPL---------------VR-DVF-------ELTGDF-CRLPKRQCNRHYCWEKLRRAEVDLERV 610
XP_002405094 316 EHSKEPKVNDDEVCGFPL---------------VS-NVF-------DHSGDF-CNLPKKRCSKHYCWDKFRRAEIDMEIV 371
XP_025017496 353 EHTKEQKIPDNEVCGYPL---------------VT-NCF-------ELTGTY-CRLPKKKCMRHYCWEKLRRAEIDMEKV 408
EGT48562     354 GLFQRLFDLVTENSRLQDRLEWNSNALSIM 383
ESO02740     545 RQWMSLDDLFEQERQVRTAMANRAGVLALM 574
Q9XUE7       406 CLFQKMYELCHEMHKLNAHAEWTTNALSIM 435 Caenorhabditis elegans
EDV24137     485 QQCLLIEETYEQIRIIQTAKEGRRGLLGIM 514
XP_001624861 482 QQWIKLEEAFEQERAITHTSAQRGGVLGLL 511
NP_001071905 351 RQWLKIDEIFDEERRIKTAMSNRAGLVSLL 380
1_pfamImport 209 RAWGKLQMLWKQERNIQMAKANRAGLLALM 238
NP_001073166 611 RVWYKLDELFEQERNVRTAMTNRAGLLALM 640
XP_002405094 372 RQWLRLDELYEQERSTCTSMTSRGGVLGLM 401
XP_025017496 409 QKWLKLEELFEKEQKIRYTLQNRGAVLGLL 438
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