5HJB,4TMP,2NDF,4TMP


Conserved Protein Domain Family
YEATS_AF-9_like

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cd16906: YEATS_AF-9_like 
Click on image for an interactive view with Cn3D
YEATS domain found in ENL and AF-9-like proteins
Yeast AFF9 is a YEATS domain protein that binds to modified histones, with a preference for crotonyllysine over acetyllysine. Histone crotonylation upregulates gene expression in an AF9-dependent manner. Sub-family also includes eleven-nineteen-leukemia protein ENL, which binds histones H3 and H1. DNA regulation by chromatin through histone post-translational modification and other mechanisms involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state and stimulates transcriptional activity through preferential interactions with crotonylated lysines on histones. The YEATS family is named for several family members: 'YNK7', 'ENL', 'AF-9', and 'TFIIF small subunit', and also contains the GAS41 protein.
Statistics
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PSSM-Id: 341125
Aligned: 50 rows
Threshold Bit Score: 136.935
Created: 20-Sep-2016
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide binding
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:5HJB: human Af9 binds crotonylated histone H3 at K18; contacts at 4A
  • Structure:4TMP: yeast AF9 binds H3k9ac peptide; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                               # #                             # ##                #####
5HJB_A        11 VKLELGHRAQVRKk----PTVEGFTHDWMVFVRGPEhs----niQHFVEKVVFHLHESFPrPKRVCKdPPYKVEESGYAG 82   human
XP_003144746   9 VRLRIGHKSEMLDr----PTSTGMTHRWTVFVHSFSgmp--ftdRSFISKVIFELHPDFSsPRRVVKePPFEVSELGYGG 82   eye worm
KFD55117       6 LRLEVGHESVMLDap-ipAEPYPHTHRWTVFVRSVSsvr---ldSNLVEKVVFQLHEDFKcSRRVVTsAPFEVTETGYAG 81   pig whipworm
KRY75554       9 LRLQIGHESVMLQpp-lpATPYAHTHRWTIFVRGHNglr---vdNGLIQKVIFQLHADFKcSRRVVTsPPFEVTETGYAG 84   Trichinella ps...
KKA76645      10 VRLQVGHRSELLEpdhpkALADGHTHRWTVYVRNQDgtd--fqdRSFVEKVLFVLHVDFPnYKRTVKePPYQVTETGYAG 87   Pristionchus p...
ERG79755       8 VRLRVGHSAEVLNf----RTVEGYTHKWTVFVRSAGphq--fvdCSFIRKVVFVLHPDFNnCHRVVKqPPFEVTEYGFAG 81   pig roundworm
KIH65259      10 VRVYIGHESFALEk----PLPNNHRFRWVLFVRPIVgnk--ftdRSFLSKVEVELHPTFAnPFRVLKePPFELEETGYAS 83   Ancylostoma du...
CEF68064      15 AKFCIGHYSEKFKk----PNEHGHTHKWLLFVRHINrsv--ikdKDFISKVTYKLHPSFPdNIRIFKePPFELSETGYGS 88   Strongyloides ...
GAA50575       7 FVFKVGHSVQRRA-----KPLSNRTHHWRCYVDSWNpny---plSALVRKVTFWLHDTFEnPRQVVRqPPFAIEEDGFGH 78   Clonorchis sin...
Q9NF15         1 MQVIVGHSSTRLPe----NNENGHTHKWTLFVKPGNrdydefpdNKLIQKVKFEIHESFAqPVRFVTkPPFKITETGFAS 76   Caenorhabditis...
Feature 1        #                     ####                                             
5HJB_A        83 FILPIEVYFKnkeepRKVRFDYDLFLhle------------ghpPVNHLRCEKLTFNNp--tEDFRRKLLK 139  human
XP_003144746  83 FSIPIHITFTga--sKVYKLTYDMNLvl--------------ekYNEQFITQTIEMKQs--sSSFRELILK 135  eye worm
KFD55117      82 FAIPIVIRFVhc--kREYNVEYDMNLry--------------vpQDKVKTIHSFEFVNp--kPSLRKRLCH 134  pig whipworm
KRY75554      85 FVIPITIYLAhc--kREYYVEYDMNLry--------------vpDDKIHIMKAIELKNp---PLAMRQLIQ 136  Trichinella pseudospiralis
KKA76645      88 FTIPLSIWLAg----KCYRVQYDLNLt----------------mEQTAVYNTTTTISIgeytPQFYSIAKR 138  Pristionchus pacificus
ERG79755      82 FRIPIYVYFSgf--dKSLRILYNMELcler-----------rseVELVHAAEISELPN----AVFSVIARY 135  pig roundworm
KIH65259      84 FTPKLTIYFNtp-haKPYPVQYDMNLk----------------lEKHAFHQQELTFAMsd-vPPSFLELVK 136  Ancylostoma duodenale
CEF68064      89 FPLDVEIKFTgi--kKVYNIKYQLELtlgepletfkeqnvmildPTPQFIETILKINGm---MEKKKPIMI 154  Strongyloides ratti
GAA50575      79 FQLQIEVAFLd----CVTTFTYDLRLf-----------------DNNALHTYRTVRVIp--aPEDWDRMIQ 126  Clonorchis sinensis
Q9NF15        77 FTTLVTIFLNlp-neKPRTIPYELTLft--------------gdQDVQLETQKLVVQKd--vPPAYLELIK 130  Caenorhabditis elegans

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