Conserved Protein Domain Family
LIM_Ltd-1

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cd09443: LIM_Ltd-1 
The LIM domain of LIM and transglutaminase domains protein (Ltd-1)
The LIM domain of LIM and transglutaminase domains protein (Ltd-1): This family includes mouse Ky protein and Caenorhabditis elegans Ltd-1 protein. The members of this family consists a N-terminal Lim domain and a C-terminal transglutaminase domain. The mouse Ky protein has putative function in muscle development. The mouse with ky mutant exhibits combined posterior and lateral curvature of the spine. The Ltd-1 gene in C. elegans is expressed in developing hypodermal cells from the twofold stage embryo through adulthood. These data define the ltd-1 gene as a novel marker for C. elegans epithelial cell development. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein.
Statistics
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PSSM-Id: 188827
Aligned: 11 rows
Threshold Bit Score: 77.845
Created: 21-Jul-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment:The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                   #  #  #  #                       #  # 
NP_495697      7 CNRCGKQVYPTDKVgplKDSTFFHQGCFKCYICGTRLALk-tYCNNRNdinDKEVYCSNHV 66  nematode
NP_611493     11 CLRCSETVYQVDRVgplKDFTFFHSGCFKCVHCGTKLTLktyFNNQHKq-dDKEVYCSSHV 70  fruit fly
T27937       668 CFRCKRPTYFNDKMgplKDGSMFHKGCFKCWICGTRLSLk-tYHNNRNdntDLEVYCAGHV 727 nematode
XP_002408147 584 CTRCGDKVYPKEMVt-pKPGVLLHSGCFKCRECGVKLTLqtfFTNQRDt-rDVDVYCRTHV 642 black-legged tick
XP_002433491   8 CLRCGQTVYQVDKVgplKDFTFYHQGCFKCLLCGTKLTLktyFNNQQSq-eDKEVYCQNHV 67  black-legged tick
XP_652956      5 CPVCNKFAYAAESCn--INGTFYHKSCMKCKVCNCNLSIs-sYKLLKG---TNEIYCSVHL 59  Entamoeba histolytica HM-1:IMSS
XP_656918      6 CFACGKSAYPLERIt--AGGKDYHNACFKCKECGLHLTLk-nFFFDQG---TQAVYCKNHV 60  Entamoeba histolytica HM-1:IMSS
EFA84353       6 CAICSKTSYPLESIv--NGDKTYHKGCFKCSECKLTLNV---KNFKYL---DGKLYCAVHT 58  Polysphondylium pallidum PN500
EEH60154     142 CPCCAKTAYAAESYd--VDGSKYHKGCFKCVTCGVSLSM---ETFVSQ---GANLYCKRDV 194 Micromonas pusilla CCMP1545
XP_001420683   7 CARCKRAAYDAESVd-vDARTRYHAACFKCADCGARCAI---ATFVKI---GEEVYCRRHA 60  Ostreococcus lucimarinus CCE9901
XP_002504044 148 CPACDKTAYAAEAVd--VDGAKYHRHCLRCRECSCSLSL---TTMVQC---EGRLWCARDA 200 Micromonas sp. RCC299

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