Conserved Protein Domain Family
TIGR00043

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TIGR00043: TIGR00043 
rRNA maturation RNase YbeY
This metalloprotein family is represented by a single member sequence only in nearly every bacterium. Crystallography demonstrated metal-binding activity, possibly to nickel. It is a predicted to be a metallohydrolase, and more recently it was shown that mutants have a ribosomal RNA processing defect. [Protein synthesis, Other]
Statistics
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PSSM-Id: 272871
Aligned: 25 rows
Threshold Bit Score: 108.118
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9A143       36 KEMSVTFVTNERSHELNLEYRDTDRPTDVISLEYKPETPilfsqedlaaDPSLAEmmaefdayIGELFISIDKAREQSQE 115 Streptococcus py...
Q8UID9       49 VELSLVFTDDENIREINAEWRDKDKATNVLSFPAFPLE-----------PGGMPGp------mLGDIVIARETVEREALE 111 Agrobacterium fa...
Q8NNB7       36 AEASIHIVDVDTIADLHVKWLDLEGPTDVMSFPMDELTPgys----rpdGATPGPa------mLGDIVLCPEFAAKQATK 105 Corynebacterium ...
P58557       35 FDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHLKage----fpqPDFPDDy------nLGDIFLGVEYIFHQCKE 104 human
CAE22239     72 LSLGLQLTDDATITELNHSWRQRSESTDVLSFPALDNSLvl---------pTDTCv------eLGDIVVSVQTAQRQAKQ 136 Prochlorococcus ...
Q55142       58 YELTLLFTGDRRIQELNRKFRHQDKPTDVLAFAALEGDFpli-----esEETEEPl------yLGDIVISLERADHQARE 126 Synechocystis sp...
O51087       37 FELSVILCDNAYIQELNNKFRNKNEPTDVLSFNYNEHNElne-----dlVDGINYk------iQGDLVISFEYLKFSAQE 105 Borrelia burgdor...
AAS11760     38 WDISLLFCDDAFIQNLNKQYRDIDSPTDVLSFEQGDE-Yfd-------eAGETRFm-------AGDIVISLDSLSFNAEE 102 Treponema dentic...
AAQ65704     37 GEISYLFCDDEYILKANQEFLDHDYYTDIITFDSC-EADt----------------------vNGDLLISLDTVRSNARA 93  Porphyromonas gi...
tigr:CT1383  34 GSIEAIYCGNKMIRRINRDFLGHDYVTDTITFGYN-EGGe----------------------vDGEFYISLDVIESNARR 90  Chlorobium tepid...
Q9A143      116 YGHSFEREMGFLAVHGFLHINGYDHYTLEEEKE-MFTLQEEILTAYG 161 Streptococcus pyogenes
Q8UID9      112 LDKSFEDHLTHLLVHGFLHLFGYDHMDEEEAEE-MESLETRILAVLG 157 Agrobacterium fabrum str. C58
Q8NNB7      106 AGHDLAHELALLTVHGSLHLLGYDHVDPAEERE-MFALQNELLADWY 151 Corynebacterium glutamicum ATCC 13032
P58557      105 -NEDYNDVLTVTATHGLCHLLGFTHGTEAEWQQ-MFQKEKAVLDELG 149 human
CAE22239    137 HSHELGLELRWLVSHGLLHLLGWDHPTDQSLKT-MLSYQEQLLSING 182 Prochlorococcus marinus str. MIT 9313
Q55142      127 RGHSAKLEVVWLTAHGLLHLLGWDHPDEASLTT-MLSEQSHLLTLIG 172 Synechocystis sp. PCC 6803 substr. Kazusa
O51087      106 FNVEIYEELQRVTIHGILHLMGYKHETNDFQKEgMLILQENILKENK 152 Borrelia burgdorferi B31
AAS11760    103 FNVDINEELKRLIVHGILHLNGMDHSDNSPEQE-MLKFQEELLMQYK 148 Treponema denticola ATCC 35405
AAQ65704     94 LDLRYEDELHRVIIHGILHLCGLKDKSKKDEAQ-MRAAEEKALVMLR 139 Porphyromonas gingivalis W83
tigr:CT1383  91 FGVSFEDELLRVTIHSALHLMGYDDETSELRAA-MSLREDHYLYRLR 136 Chlorobium tepidum TLS
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