1URO,1R3Q,1R3Y


Conserved Protein Domain Family
URO-D

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cd00717: URO-D 
Click on image for an interactive view with Cn3D
Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Statistics
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PSSM-Id: 238368
Aligned: 71 rows
Threshold Bit Score: 374.557
Created: 7-Feb-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitesubstrate
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1R3Q: uroporphyrinogen decarboxylase in complex with coproporphyrinogen-I and carbon dioxide
  • Structure:1R3Y: uroporphyrinogen decarboxylase in complex with coproporphyrinogen-III
  • Comment:conserved residues in the catalytic cleft

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                            #   #                                             #        
1URO_A       20 LRAAWge----etDYTPVWCMRQAGRYLPEFRETRAaq-dFFSTCrspEACCELTLQplrrfPLDAAIIFSDILVVPQal 94  human
1R3Q_A       20 LRAAWge----etDYTPVWCMRQAGRYLPEFRETRAaq-dFFSTCrspEACCELTLQplrrfPLDAAIIFSDILVVPQal 94  Homo sapiens
AAK25725     15 LSALEgq----shANPPVWFMRQAGRYLPEYRAVRAtapdFISFCfdpEKAAEVTLQpmrrfPFDASIVFADILLIPGal 90  Caulobacter cres...
ZP_00054541   9 LRALAge----tlTPPPFWLMRQAGRYLPEYRATRAeagsFLDLCynsDLACEVTLQplrryGFDAAILFSDILVVPDal 84  Magnetospirillum...
NP_966753    10 KIIKRne----pgGRVPIWLMRQAGRSLPEYRKAVEnmnnFMEICyntDLVTELTLQpvtrfDMDAAIIFSDILIIADvl 85  Wolbachia endosy...
AAY62251      5 INPLKrn-----sNKIPIWFMRQAGRYLPEYKKVREktknFLDFCydvNKATEVTLQpikryGFDAAIIFSDILVLPHal 79  Rickettsia felis...
NP_970187     6 HNALKrt----pqAVPPIWFMRQAGRYHKHYQGMRAnh-sFDQLCkraELAAEVARGpvaefDFDVSILFSDILYPLEal 80  Bdellovibrio bac...
NP_703735    67 LNVIEnkneekkfKKIPLWIMRQAGRYLPEYVEIRKky-dFFEICkspDLSSYVSIMpydrfKTDMIVIFSDILIIFVam 145 Plasmodium falci...
NP_714560    17 TNVLNgi----aqKIPPVWMMRQAGRYHKHYQTLRTky-sFEELCknpDLAAEVAYGpvdefDFDVAILFSDILFPLEal 91  Leptospira inter...
YP_191464    16 LRALRge----avWPPPVWLMRQAGRYLPEFRAMRDra-dFLTRCmtpDMATELTIQpirryGMDGAILFSDILILPWam 90  Gluconobacter ox...
Feature 1                                                                             #         
1URO_A       95 GMEVTMVpgKGPSFPEPlreeqdlerl-rdpevvaseLGYVFQAITLTRQrlagrvpLIGFAGAPWTLMTYMVEGGGsst 173 human
1R3Q_A       95 GMEVTMVpgKGPSFPEPlreeqdlerl-rdpevvaseLGYVFQAITLTRQrlagrvpLIGFAGAPWTLMTYMVEGGGsst 173 Homo sapiens
AAK25725     91 GQKVWFEagEGPKLGDMpsvesmae----kageagkaLSLVGETLTRVRSaldpdkaLIGFAGAPWTVATYMIEKGSsdr 166 Caulobacter cres...
ZP_00054541  85 RQHVAFKegEGPVLTPIrsaedlsgl---disglhdhLAPVYDTVKKLSAaipkttaLIGFAGAPWTVATYMIEGSGskd 161 Magnetospirillum...
NP_966753    86 GCDVNFVrgVGPIIKPVespkelkg-----pqeietkTLPILNAIKKVRSqlpkeksLIGFAGGPWTVASYIIEGRSskt 160 Wolbachia endosy...
AAY62251     80 GWEVDFKenIGPILKQFksqedfky----lqsnpnnkLEKVYEIIKKVKEelpsttsLIGFAGSPWTVMSYMLEGKGkqd 155 Rickettsia felis...
NP_970187    81 GMGLEYTd-HGPQLGFKltpetigtl--ggveeavkfMHFQKEAVQATRAvlpsnksLIGFVGGPWTLFVYAVEGSHag- 156 Bdellovibrio bac...
NP_703735   146 GIDIKFVenLGPVFNLEiynmndfnklnlnmkeiidnLYYVYDSINLTKKkinndvpILGFCGSPFTLFMYLTKNNKkty 225 Plasmodium falci...
NP_714560    92 GMGLRYTd-SGPVLDLEirskedlnkl-ksvedsisfMQFQKKAIQRTLEklpkeksLIGFVGGPWTLFTYAVCGKHeg- 168 Leptospira inter...
YP_191464    91 GQSLEFIdgRGPVLGAIrseadlarl---dpkrvqdaVAPVRETLSRLTKelpdvttLLGFAGSPFTVSCYMVEGGGsrd 167 Gluconobacter ox...
Feature 1                                                    #                                  
1URO_A      174 maqakRWLYQRPqaSHQLLRILTDALVPYLVGQVvaGAQALQLFESHAGHLGPqLFNKFALPYIRDVAKQVKarlreagl 253 human
1R3Q_A      174 maqakRWLYQRPqaSHQLLRILTDALVPYLVGQVvaGAQALQLFESHAGHLGPqLFNKFALPYIRDVAKQVKarlreagl 253 Homo sapiens
AAK25725    167 s-garTFAYQNPetLDALIQVLVDATIDYLAMQVdaGAQALKLFESWAEGLSEpLFDRLVTQPHIRIIEGLRarg----- 240 Caulobacter cres...
ZP_00054541 162 fakakTMMFGQPelFARLMDLLVRATGDYLIRQIdnGAEAIQIFDTWAGALPEdMFERWVIGPTRALVERIRaer----- 236 Magnetospirillum...
NP_966753   161 ---fsKVLNFYPscLKEIIERITEVTIIYLIKQIefGADVIQLFDSNAGALSEpLFKEYVIEPTKRIILAIKdrf----- 232 Wolbachia endosy...
AAY62251    156 fktskKFIYENKilAKELLNFITEKTADHLVNQAksGADVLKLFDSWSGVLGEeEFTEFVIEPTKKIILKVKedf----- 230 Rickettsia felis...
NP_970187   157 ---slIQSKKLApmFPQFLEKMYPLLKENIRLQLegGVEIVMIFDTAAGEVSPlFFQEWIQPVLARLSQDYPg------- 226 Bdellovibrio bac...
NP_703735   226 e-dsfKFLYEKPndAHQIINKLSDICLNHLINQIdsGANIIQIFDSNAELVDKnIFNEFSIIYLKKVIEIIKkyr----- 299 Plasmodium falci...
NP_714560   169 ---nlFLPKTLTevRKEFLEKIIQFLKENISIQLegGAELILIFDTAGGDLSPeLFREIVIPGIKTLSDFYPg------- 238 Leptospira inter...
YP_191464   168 faetrRMMQTNPalFDRLIDTLTSSTAEMLCGQIeaGAEAVMLFDSWAGILPPsAFRRYVIEPTRQIVEYIRarh----- 242 Gluconobacter ox...
Feature 1                                                                                       
1URO_A      254 apvPMIIFAKDGh----fALEELAQag-yEVVGLDWtv---aPKKARECVgk---tVTLQGNLDPc-ALYAse-eeIGQL 320 human
1R3Q_A      254 apvPMIIFAKDGh----fALEELAQag-yEVVGLDWtv---aPKKARECVgk---tVTLQGNLDPc-ALYAse-eeIGQL 320 Homo sapiens
AAK25725    241 vtvPIIGFPRGAg----tLVEDYAArtpvQGVALDTsa---sAKLGQTIQk----tKTIQGALDPl-LLRAgg-daLLKR 307 Caulobacter cres...
ZP_00054541 237 pgiPVIGFPRGAg----iLYKRYVTetkvSGVSLDPsv---pLDWAAAELqp---lCTVQGNLDPl-LLVAgg-eaLDSG 304 Magnetospirillum...
NP_966753   233 sdfPIIGFPRSAg----nLYKDYCEqtgvSAVSIDYnv---pIKWAKANLn-----IPLQGNLDP--NLLAynkteAIKE 298 Wolbachia endosy...
AAY62251    231 pkiPIIAFPKGAv----lLYEKFIKevpiDILAVDQmv---pLEKMKEWSd----kVIVQGNLDPv-VLLTnk-eiIKEK 297 Rickettsia felis...
NP_970187   227 ---KIGYYSKGTqa--vfFNDAFKAlp-wAGQGFDHrn---yLPDCFNIQn----kGFVQGNFDQs-LLFMde-adFKKA 291 Bdellovibrio bac...
NP_703735   300 pniYIILFIKNN------FHDDIKNlk-iDVLSITHkqlidnTDQFYFKLfq--nnIILQGALDPyiLLLNdh-elIQKH 369 Plasmodium falci...
NP_714560   239 ---KVGYYGRGTssihfeMIREITTl---AGFGFDHrw---nLREIFKTEs-----RMIQGNFDQs-LLFLgk-eeFKKI 302 Leptospira inter...
YP_191464   243 pktPIIGFPRLGg----iMVREYAQktgvNTLALDTva---dPAQISELVsevrpgLTLQGNMDPm-ILFSgg-etMIRE 313 Gluconobacter ox...
Feature 1                               #                    
1URO_A      321 VKQMLDDFgp------hrYIANLGHGLYPDMdpeHVGAFVDAVHK 359 human
1R3Q_A      321 VKQMLDDFgp------hrYIANLGHGLYPDMdpeHVGAFVDAVHK 359 Homo sapiens
AAK25725    308 VDEMLEQWnq------gpYIFNLGHGILPDTpiaHVEAVLERVTG 346 Caulobacter crescentus CB15
ZP_00054541 305 IDRILKVLsk------gpFIFNLGHGITPPTppdNVARLAERVKG 343 Magnetospirillum magnetotacticum MS-1
NP_966753   299 AKRIIDCFrd------lpFIFNLGHGVLPDTpveNIAALVNLVKS 337 Wolbachia endosymbiont of Drosophila melanogaster
AAY62251    298 AYKILQTMkg------knFIFNLGHGILPETppeNVKFLTEYVRL 336 Rickettsia felis URRWXCal2
NP_970187   292 MHTYLAPMknmskeqragWVSGLGHGVLPKTpekNVKLFVDTVRE 336 Bdellovibrio bacteriovorus HD100
NP_703735   370 IIQMMKNIthk-----nkYIANLGHGILPTTkikNVNLFIDTIRN 409 Plasmodium falciparum 3D7
NP_714560   303 LMNYLKPFrelppaerigWVCGLGHGVMPKTpeyNVKTFVEIVRD 347 Leptospira interrogans serovar Lai str. 56601
YP_191464   314 AQAIRDAMrg------kpHVFNLGHGVMQHTppeNVAALVEAVRA 352 Gluconobacter oxydans 621H

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