Conserved Protein Domain Family
IFT20

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pfam14931: IFT20 
Intraflagellar transport complex B, subunit 20
IFT20 is subunit 20 of the intraflagellar transport complex B. The intraflagellar transport complex assembles and maintains eukaryotic cilia and flagella. IFT20 is localized to the Golgi complex and is anchored there by the Golgi polypeptide, GMAP210, whereas all other subunits except IFT172 localize to cilia and the peri-basal body or centrosomal region at the base of cilia. IFT20 accompanies Golgi-derived vesicles to the point of exocytosis near the basal bodies where the other IFT polypeptides are present, and where the intact IFT particle is assembled in association with the inner surface of the cell membrane. Passage of the IFT complex then follows, through the flagellar pore recognition site at the transition region, into the ciliary compartment. There also appears to be a role of intraflagellar transport (IFT) polypeptides in the formation of the immune synapse in non ciliated cells. The flagellum, in addition to being a sensory and motile organelle, is also a secretory organelle. A number of IFT components are expressed in haematopoietic cells, which have no cilia, indicating an unexpected role of IFT proteins in immune synapse-assembly and intracellular membrane trafficking in T lymphocytes; this suggests that the immune synapse could represent the functional homolog of the primary cilium in these cells.
Statistics
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PSSM-Id: 464383
Aligned: 37 rows
Threshold Bit Score: 99.1888
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_001316790                    9 VIFDPENnyKIRVIEPEQFKETQKLKTGCDQFSTEVNEFMTNVKQFLEFMETQSRRVEDQKLRSIALRNRVQDEIESRKR 88 
CAM70097                        7 IMFDSNG--AIRMYDPEKYDELVKTVEVERRYVEKMDEFRALVQRTMAIVQRLGEAIEAEKLKAIGFRNIVESESEERFR 84 
Q584X2                          7 VMFDANG--AIRMYDPEKFDQLVKTIEVEKRFTTRMDEFKNIVNQTMSIVEQLGKAIEEEKLKAIGSRNIVESEAEERFR 84  Trypanosoma brucei...
EFC48887                        6 LTFDEEY--NLRVFDPAKFSTSEMMKTKSEEFASKIKDFQKLVAEVMQILNNQGKTIEDEKLKAIGMRNLVKGEEDRRKN 83 
A0BL10                          7 ITFDEQN--KIRVLDAEKYRETEQLKIESMDFIKKVLALDEVVQNLNETLEEYSKKIEIEKLRAIGERNKVETEQENRKK 84  Paramecium tetraurelia...
WGS:AAGF:cds.TTHERM_00334500A   7 ITFDEEN--KIRVLEQDKYKETDQLKNESMEFIKKVLNLDEVIAQIIETLENYAKKIEQQKLRAIGERNKVESEAENRKK 84 
EFJ29132                        4 VSIDEES--CVRLLPTDTYARCHSVENSCAAFRSKVSSFNKLVKELLGQVGERASKIENAKLCAIGTRNLVRDEMEKRPQ 81 
jgi:MICPUN_59500                6 VTFDENY--RVRVLAQDKYDKTLALADSATEFCEKVAQLNGIVKEVVESVDRQAARTEREKLRAVGKRNQVAADAEQRRR 83 
Q8LLV9                          8 VYFDEDF--HVRILDVDKYNASKSLQDNTNVFINNIQNMQGLVDKYVSAIDQQVERLEAEKLKAIGLRNRVAALSEERKR 85  Chlamydomonas reinhardtii...
CBJ30699                        9 ISFDEEC--RIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLR 86 
XP_001316790                   89 AQDDLQNVIEAKQKQLERLSAEIRSWEEYER 119
CAM70097                       85 AVQEAQIRLREKQMELDRYVAEYESLKLVEQ 115
Q584X2                         85 TVQEAQVRLREKQAELDRYIAEYDSLKKVEQ 115 Trypanosoma brucei
EFC48887                       84 LLREYNQLITDKHTELERYIDELESLKKVDQ 114
A0BL10                         85 KLMELSNILNERKAELDRYQIELDSLQKVEQ 115 Paramecium tetraurelia
WGS:AAGF:cds.TTHERM_00334500A  85 KMMDLNNLLNEKKAELERYSTELESIQKVES 115
EFJ29132                       82 ELQVVKEGIDRRKEELERLRVEHLSLMAVKQ 112
jgi:MICPUN_59500               84 KKAELASLRLEKQAELDRLQAEYDSLLRVRQ 114
Q8LLV9                         86 KQKEQERMLAEKQEELERLQMEEQSLIKVKG 116 Chlamydomonas reinhardtii
CBJ30699                       87 QKASLQTMLKEKMLELDRQNLQYQSLLRIES 117
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