Conserved Protein Domain Family
SAE2

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pfam08573: SAE2 
DNA endonuclease activator SAE2/CtIP C-terminus
SAE2 is a protein involved in repairing meiotic and mitotic double-strand breaks in DNA. It has been shown to negatively regulate DNA damage checkpoint signalling. SAE2 is homologous to the CtIP proteins in mammals and an homologous protein in plants. Crucial sequence motifs that are highly conserved are the CxxC and the RHR motifs in this C-terminal part of the protein. In budding yeast, genetic evidence suggests that the SAE2 protein is essential for the processing of hairpin DNA intermediates and meiotic double-strand breaks by Mre11/Rad50 complexes. SAE2 binds DNA and exhibits endonuclease activity on single-stranded DNA independently of Mre11/Rad50 complexes, but hairpin DNA structures are cleaved cooperatively in the presence of Mre11/Rad50 or Mre11/Rad50/Xrs2. Hairpin structures are not processed at the tip by SAE2 but rather at single-stranded DNA regions adjacent to the hairpin. The catalytic activities of SAE2 are important for its biological functions. Although proteins containing this domain were described as endonucleases, it is now known that they actually function as endonuclease activators. This domain contains highly conserved residues at its 15-residue extreme that are indispensable for MRN (Mre11-Rad50-Nbs1) complex activation, through the stimulation of Mre11 endonuclease activity.
Statistics
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PSSM-Id: 462525
Aligned: 65 rows
Threshold Bit Score: 60.8379
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EKG11201     685 AYSEVVRSREaRQCLPGCTKPDCcGRDLRAMVEAGLNPPlprsfwddsqptyaqtfvsdKEAQDHRYLQwfqgtsyDRDR 764
XP_001608457 614 EFYEVEEADDaEEve----------------------------------------------------------------- 628
Q7RC03       655 TFYEICDDNQsKK------------------------------------------------------------------- 667 Plasmodium yoel...
EKM75442     158 QYDEVVRGRAeRSRMDAGDCEEC-RDWYTAVGPMPIRDRgplwrsp------sttpvkrCEKHVSRASS----------- 219
XP_003026714  22 QFEDVVRGREsRKRLEATDCECC-REYYEAVGPLPARPQgplwrspsr---sprkhrpeCQHH----------------- 80 
EPT02363      19 pFDEVVRDKAcRKRLRGADCECC-REYYKAVGKLPPGPQpplwrspha--------------------tpmkatspGRRH 77 
Q5KBH7        99 AFHDVKRKKTeRMQMHGGDCECC-KGYYEAVGVMPKFHRapt-------------------------------------- 139 Cryptococcus ne...
EED78212      20 QFDEVVRNKGqRRHMHAFDCECC-REYYEAVGPLPARLQaplwkspqstpskrtarsehLts------------------ 80 
EMD37051     545 QFDDVVRNKQqRKNLHADDCECC-RDYYEAIGPLPSRLRpplwrspes---tpskpssrPHKHLGGALS----------- 609
CCA66954     511 AYDEVVRNKAeRKRMEATDCDQC-REFYKAAGPLPPRLQaplwksptssqdpaaapqrhCKHHsn--------------- 574
EKG11201     765 VHA--------------MPSAMRDDLVVQAKVKLLASQAGKHRHAHQRPRTPPGFWRADFPGTQ 814
XP_001608457 629 ---------------eaEEAEEAEARRKENKKKKLIQSFSRHRYHSKVNDSPKNFWSFDF---F 674
Q7RC03       668 ---------------------------NEINKKKAIQAYSRHRFHNKVNDSPQNFWGFDF---F 701 Plasmodium yoelii yoelii
EKM75442     220 -SShn----------hdRELSPSPSDRSHANIEYHKKQISRHRHNWARAQTPFGFWNIAMPSTQ 272
XP_003026714  81 ------------------QDDRRQDDHRDEQVQAHRQAISRHRQQWARAKTPPGYWEIGFPSTQ 126
EPT02363      78 LADassvpnsprkrrvrDEDGDEDADEDTAAIAAHVQQISRHRQQWERPKTPPGYWEIAFPDTQ 141
Q5KBH7       140 ----------------wkDQEQIEEENGEQAVREHLNKVSRHREDWVKPPTPPGYWKIGFPTTQ 187 Cryptococcus neoformans
EED78212      81 ----------------vDLDIDADEAEQEQAIAKHRQEISRHRQQWERPLTPPGYWEIGFPDTQ 128
EMD37051     610 -TTalss------tdsqDEPPTTADAEQADAITEHRHQISRHRHQWARAKTPPGYWDIGFPDTQ 666
CCA66954     575 ----------------kEESDDSGSESEDSGVRAHRQEVSRHRYIMPSGETPPGFWDLDFPDTQ 622
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